G1982455 (LOC106611408)


Basic Information

Item Value
gene id G1982455
gene name LOC106611408
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40606315 ~ 40634145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2266354
tctctctctctctctctctctctctctctctctctctctctctctctctctctctcttttacatgACCCTGTCCTTGTATCTATCCTTCCCCCATAACCACTCCACCTCTAATCTCTGTCTATCGTTCATCTGACTTCATCCTTATAGATATGTCACATCTGTCATCTAAACACAATCTGTACACACTTTAACTCTAACCTCTAAGCCCTAAACCCATATCTAGCACCAGGAATAATCCAGATAACCTATATAAAAATGGGACTCCATTGTCTTCACAATTCTCAAATAAAATACACTTGAAAACTCATAGAACACAAAATCAACTGTTATAAAAATGTACAAAGGTATtaaagataaataaaaaataaacgagACAGAAGATACTTTATAATGAGATGAGGGAAGTGAAGCACATACTACATTTACAAAAAAAGTCTCAATCAAATTATGTCAAATGTCAAAAAAAACTAAATAAGATGATTTAATTcatgaaatatttttattttgtcttaatttcattattttacttttagatgtgtgtgttttgttgtaaattgttagatattactgcactgtcggagctacagtaggaaaaacaagcatttcactacacccgcaataacatctgctaaatatgttgatttgttttaaAGACTATTTAAGTATCAAATAATATAAATATAGGTAGGGTAACTTTAGCAGAATGCATTCCACCAATCACAATCATGATTCCAAACAATAAGCCAATCACAATCAAAAGAGACATTCTCAGACATGCCCACTGCAGCAGTTGCTTCACTGGGAGGGACAGTTTGTCTTTGGTAACTGAAAcctcaaaatacatttttttttaatatatatattttaataatataatacaatgtTGCTTTCTTAATCTCAAAATGGCTACTGCTGCATACTAAAACTAGATACTTgactgaaacaacaggtcagagaaaaaaaacaacattcaTGTTACCCAATAATCTATTAACAGAGACAATCATCttgtaccagtggaggctggtggaaggagcgAGAGGAGGACGGACTCATTGTAATACCGggaatgaaataaatcaaatggtatcaaacacatgtttAACTCCACTCCActaattccattccagccgttacaacgagcccatcctcctattGCTGtgctcaccagcctccactgtcctGTACAATAGCCAGTCTGGTGGCTggtaggtttttttttttttcaacagtgtTCGACTTCCAACAATTTCCCCCGGGTGCAGGATACATAAAGTCTCCTAGATCCTGGACTGAAGCCTCTGTCCTGGGTATATGAGTAGGACAGCGACTCACCAGTCTGGTGCTCTAGCCGACCCACAAGACGGTGTGTGTCTCCATAGACCTGCTCTGCTGCCAATCAAGGCTGCCATTGGTGGCCTCGGCACGTCCGACAGTGAGCTTGATCAATCCAAAAGTCTTGCAGGAATCGCATGTCACGGCCAACCCATTGCCCTCCATTGATTCGCCCTCCCCTTCCCGCTCCGAGATGGCAGTCATGGGGCTGCTGGGTAGTCGGCTGCGGGCAGCGAAACGCCGGCTGGCTGAGCAAGGGGGAGTGCGGGAGCGGGGGGGCCGCCACCcccaaagagagggggagggggaggggtacgtgggggaggacagggaggagagagggagcgtgCCCTCAGTGAGTGCCCACTCTGCCCtcctcctgtgtctgtgtgtggactgGGACTGGGGTAGGTGTAGCGTCATTAGCtggacagtgtgtgtttgtgcaaagGGCTgaggggtgtgagtgtgtgactCCACTCCAAGCTGCAGGTGTATGTCTGACAGGGGATGGCTCTGTGAGCTCTGGCTTGGTGAGCTCCGTGAGCTCTGACTCTGTGAGCTCTGTGAGTGCTGGCTCTGTGAGCTCTGGCTCTGTGAGCTCTGGCTTGGTGAGCTCTGTGAGCTTTGACTCTGTGAGCTCTGTGAATGCTGGCTCTGTGAGCACAGGCTCTGTGAGCTCTGGCTCTGTGAGCTCTGGCTTGGTGAGCTCCATGAGCTCTGACTCTGTGAGCTCTGGCTCCGTGAGCTCTGACTCTGTGAGCTCTGGCTATGTGGTGCCGCCATCATGTGTTTGGGGGCAGTACTGCGGAGTCTCTCGGCTGCAGACATGCGAGCTACAGGGTCGCAGCGACTTCCCTTCCTCAGGAGCAGAGCCTTGAAGCTGTCACTGCTGCTGCTGACCCCTAACCTATGACCTCTCACCTTACTGGATCCTAACACCTCAAGAGGTTGCAGAAGGGTGGGGCTAGGGCTTGGAGGGGTcactggaggagtggaggagaaagaagaggaggaggataggggaAAGACACGGCATCGGTCTTCCTCAGAGTTCCTGCGCCCAAGAACTTTC
>TU2266353
ttATTCAACTCATCATTAAGCCTTCTCCTCAGTCTGTACATCAGTCTgtacatcagtctctctctctctctctctctctctctctctctcttttacatgACCCTGTCCTTGTATCTATCCTTCCCCCATAACCACTCCACCTCTAATCTCTGTCTATCGTTCATCTGACTTCATCCTTATAGATATGTCACATCTGTCATCTAAACACAATCTGTACACACTTTAACTCTAACCTCTAAGCCCTAAACCCATATCTAGCACCAGGAATAATCCAGATAACCTATATAAAAATGGGACTCCATTGTCTTCACAATTCTCAAATAAAATACACTTGAAAACTCATAGAACACAAAATCAACTGTTATAAAAATGTACAAAGGTATtaaagataaataaaaaataaacgagACAGAAGATACTTTATAATGAGATGAGGGAAGTGAAGCACATACTACATTTACAAAAAAAGTCTCAATCAAATTATGTCAAATGTCAAAAAAAACTAAATAAGATGATTTAATTcatgaaatatttttattttgtcttaatttcattattttacttttagatgtgtgtgttttgttgtaaattgttagatattactgcactgtcggagctacagtaggaaaaacaagcatttcactacacccgcaataacatctgctaaatatgttgatttgttttaaAGACTATTTAAGTATCAAATAATATAAATATAGGTAGGGTAACTTTAGCAGAATGCATTCCACCAATCACAATCATGATTCCAAACAATAAGCCAATCACAATCAAAAGAGACATTCTCAGACATGCCCACTGCAGCAGTTGCTTCACTGGGAGGGACAGTTTGTCTTTGGTAACTGAAAcctcaaaatacatttttttttaatatatatattttaataatataatacaatgtTGCTTTCTTAATCTCAAAATGGCTACTGCTGCATACTAAAACTAGATACTTgactgaaacaacaggtcagagaaaaaaaacaacattcaTGTTACCCAATAATCTATTAACAGAGACAATCATCttgtaccagtggaggctggtggaaggagcgAGAGGAGGACGGACTCATTGTAATACCGggaatgaaataaatcaaatggtatcaaacacatgtttAACTCCACTCCActaattccattccagccgttacaacgagcccatcctcctattGCTGtgctcaccagcctccactgtcctGTACAATAGCCAGTCTGGTGGCTggtaggtttttttttttttcaacagtgtTCGACTTCCAACAATTTCCCCCGGGTGCAGGATACATAAAGTCTCCTAGATCCTGGACTGAAGCCTCTGTCCTGGGTATATGAGTAGGACAGCGACTCACCAGTCTGGTGCTCTAGCCGACCCACAAGACGGTGTGTGTCTCCATAGACCTGCTCTGCTGCCAATCAAGGCTGCCATTGGTGGCCTCGGCACGTCCGACAGTGAGCTTGATCAATCCAAAAGTCTTGCAGGAATCGCATGTCACGGCCAACCCATTGCCCTCCATTGATTCGCCCTCCCCTTCCCGCTCCGAGATGGCAGTCATGGGGCTGCTGGGTAGTCGGCTGCGGGCAGCGAAACGCCGGCTGGCTGAGCAAGGGGGAGTGCGGGAGCGGGGGGGCCGCCACCcccaaagagagggggagggggaggggtacgtgggggaggacagggaggagagagggagcgtgCCCTCAGTGAGTGCCCACTCTGCCCtcctcctgtgtctgtgtgtggactgGGACTGGGGTAGGTGTAGCGTCATTAGCtggacagtgtgtgtttgtgcaaagGGCTgaggggtgtgagtgtgtgactCCACTCCAAGCTGCAGGTGTATGTCTGACAGGGGATGGCTCTGTGAGCTCTGGCTTGGTGAGCTCCGTGAGCTCTGACTCTGTGAGCTCTGTGAGTGCTGGCTCTGTGAGCTCTGGCTCTGTGAGCTCTGGCTTGGTGAGCTCTGTGAGCTTTGACTCTGTGAGCTCTGTGAATGCTGGCTCTGTGAGCACAGGCTCTGTGAGCTCTGGCTCTGTGAGCTCTGGCTTGGTGAGCTCCATGAGCTCTGACTCTGTGAGCTCTGGCTCCGTGAGCTCTGACTCTGTGAGCTCTGGCTATGTGGTGCCGCCATCATGTGTTTGGGGGCAGTACTGCGGAGTCTCTCGGCTGCAGACATGCGAGCTACAGGGTCGCAGCGACTTCCCTTCCTCAGGAGCAGAGCCTTGAAGCTGTCACTGCTGCTGCTGACCCCTAACCTATGACCTCTCACCTTACTGGATCCTAACACCTCAAGAGGTTGCAGAAGGGTGGGGCTAGGGCTTGGAGGGGTcactggaggagtggaggagaaagaagaggaggaggataggggaAAGACACGGCATCGGTCTTCCTCAGAGTTCCTGCGCCCAAGAACTTTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2266354 False 2411 lncRNA 0.47 2 40606315 40634145
TU2266353 True 2445 lncRNA 0.46 3 40631569 40634145

Neighbor

gene id symbol gene type direction distance location
LOC118944272 NA coding upstream 26657 40578668 ~ 40579658 (+)
LOC110505917 LOC106611409 coding upstream 151521 40440430 ~ 40454794 (+)
LOC110505926 LOC106611410 coding upstream 180607 40412129 ~ 40427679 (+)
LOC110505920 LOC106611413 coding upstream 242146 40356100 ~ 40364169 (+)
LOC110505913 LOC106611411 coding upstream 250357 40341646 ~ 40355958 (+)
snx9a LOC105031565 coding downstream 55043 40689188 ~ 40741739 (+)
pomca LOC100510783 coding downstream 185551 40819696 ~ 40822826 (+)
dnajc27 LOC106611405 coding downstream 194901 40829046 ~ 40860054 (+)
si:ch211-132f19.7 LOC106611404 coding downstream 233956 40868101 ~ 40891112 (+)
LOC110504259 LOC106603281 coding downstream 663287 41297432 ~ 41350749 (+)
G1982439 NA non-coding upstream 20895 40584577 ~ 40585420 (+)
G1982430 NA non-coding upstream 29952 40567283 ~ 40576363 (+)
G1982425 NA non-coding upstream 45191 40559126 ~ 40561124 (+)
G1982424 NA non-coding upstream 47301 40557704 ~ 40559014 (+)
G1982422 NA non-coding upstream 50281 40555536 ~ 40556034 (+)
G1982496 NA non-coding downstream 30925 40665070 ~ 40666235 (+)
G1982511 NA non-coding downstream 61801 40695946 ~ 40696300 (+)
G1982512 NA non-coding downstream 69979 40704124 ~ 40704360 (+)
G1982517 NA non-coding downstream 80877 40715022 ~ 40715860 (+)
G1982525 NA non-coding downstream 102614 40736759 ~ 40738437 (+)
G1982355 NA other upstream 215908 40389658 ~ 40390407 (+)
LOC110505902 LOC106611388 other upstream 1052823 39543907 ~ 39557667 (+)
G1981068 NA other upstream 1511501 39036366 ~ 39094814 (+)
LOC110505893 dio2 other upstream 2031955 38565810 ~ 38575881 (+)
G1980792 NA other upstream 2077210 38528607 ~ 38529105 (+)
G1983277 NA other downstream 413406 41047551 ~ 41047902 (+)
G1983387 NA other downstream 581330 41215475 ~ 41216752 (+)
G1983499 NA other downstream 814257 41448402 ~ 41449340 (+)
LOC110505959 LOC106611457 other downstream 1106062 41740173 ~ 41757394 (+)

Expression


Co-expression Network