G1982530


Basic Information

Item Value
gene id G1982530
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 40771677 ~ 40773522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2266446
TCCACATAagaaaatataatttattttaattgcatAACATTTATGTAgtaaattttttttggggggggttattTGTTCAATTGGGTTACCTTTATCAATGAATGTGGTGTGAATTTAGCTCCAAATATGAGGGTGGACTTACTTTATCACATGACTGTAGATCTCATAGCGAATTAATCAGTAACAAGACAGTTGACAGAAACGGACATTCACAGATGTATGGAAGTATTCACATAATAGACAGAGGAATATCAGGGCAGAATGTACAGTACGTATGTATTTACAGTGTTGCAAGtcagtgggagaggaggacagtttGTGTAAGTCCCTCTAGTGGGAGAGAATGACAGTTTGTGTAAGTCCGTccagtgggagaggaggacagtttGTGTAAGTCCCTctagtgggagaggaggacagtttGTGTAAGTCCCTccagtgggagaggaggacagtttGTGTAAGTCCCTctagtgggagaggaggacagtttGTGTAAGTCCCTCCAGTGGGAGAGAATGACAGTTTGTGTAAGTCCCTccagtgggagaggaggacagtttGTGTAAGTCCCTccagtgggagaggaggacagtttGTGTAAGTCCCTCCCATGGGAGAGAATGACAGTTTGTGTAAGTCCCTctagtgggagaggaggacagtttGTGTAAGTCCCTCCCGTGGGAGAGAATGACAGTTTGTGTAAGTCCCTCCCGTGGGAGAGAATGACAGTTTGTGTAAGTCCCTCCAGTGGGAGAGAATGACAGTTTGTGTAAGTCCCTccagtgggagaggaggacagtttGTGTAAGTCCCTCCAGTGGGAGAGAATGACAGTTTGTGTAAGTCCCTccagtgggagaggaggacagtttGTGTAAGTCCCTCCAGTGGGAGAGAATGACAGTTTGTGTAAGTCCCTCCCGTGGGAGAGAATGACAGTTTGTGTAAGTCCCTCCAGTGGGAGAGAATGACAGTTTGTGTAAGTCCCTCCAGTGGGAGAGAGTGACAGTTTGTGTAAGTCCCTCCAGTGGAAGAGCAGGACAGTTTGTCTGAGGGCTCCTGGGAACAGTATTTCAAAAGTAGAAAGAAAGCACATACACTCTCTCTTAGACTCCATGAACAGTTGGACACAATCCCATTGCAGCGTTCTCCTCGTGTCTTCTCCAGTCCTACGTCCCATCCCAAGGTGACGTCAGAAGCGACCTCAGCAGGTCTCCCACGGTCCCGACGGGCTGTCGTCACGGTGACAGGCGCGGTCTGAAGGTTCTAGGTCGTATCATCATAGAGGTCTTCCTGAGAGAGTAGTAGTCTGAATCTTTCCAGCTGTACCATACTACACCATCAGGACCCAGCAGAGTCTTGGCTTTAGAGGAGTACCGTCCACCCTGgggagaaaaacacacacacacacacacacacacacaaacaaataaataGACTACCACATCTGATGCAAATAACCTTATTTTTGTTTTGGCTGCAATTTTtgtgtacagtgcatttagaGAGTATTCAGACAcggactttttctacattttgttacgttacagccttattctaaaattacacacaataccccataatgacatcacaat

Function

NR:

description
PREDICTED: microfibril-associated glycoprotein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2266446 True 1601 lncRNA 0.46 2 40771677 40773522

Neighbor

gene id symbol gene type direction distance location
snx9a LOC105031565 coding upstream 29938 40689188 ~ 40741739 (+)
LOC118944272 NA coding upstream 192019 40578668 ~ 40579658 (+)
LOC110505917 LOC106611409 coding upstream 316883 40440430 ~ 40454794 (+)
LOC110505926 LOC106611410 coding upstream 345969 40412129 ~ 40427679 (+)
LOC110505920 LOC106611413 coding upstream 407508 40356100 ~ 40364169 (+)
pomca LOC100510783 coding downstream 46174 40819696 ~ 40822826 (+)
dnajc27 LOC106611405 coding downstream 55524 40829046 ~ 40860054 (+)
si:ch211-132f19.7 LOC106611404 coding downstream 94579 40868101 ~ 40891112 (+)
LOC110504259 LOC106603281 coding downstream 523910 41297432 ~ 41350749 (+)
LOC110505965 trim9 coding downstream 773849 41547371 ~ 41622795 (+)
G1982525 NA non-coding upstream 33240 40736759 ~ 40738437 (+)
G1982517 NA non-coding upstream 55817 40715022 ~ 40715860 (+)
G1982512 NA non-coding upstream 67317 40704124 ~ 40704360 (+)
G1982511 NA non-coding upstream 75377 40695946 ~ 40696300 (+)
G1982496 NA non-coding upstream 105442 40665070 ~ 40666235 (+)
G1982540 NA non-coding downstream 21266 40794788 ~ 40796542 (+)
G1982544 NA non-coding downstream 40820 40814342 ~ 40814544 (+)
G1982546 NA non-coding downstream 42332 40815854 ~ 40816129 (+)
G1982548 NA non-coding downstream 43382 40816904 ~ 40817166 (+)
G1982552 NA non-coding downstream 54119 40827641 ~ 40827840 (+)
G1982355 NA other upstream 381270 40389658 ~ 40390407 (+)
LOC110505902 LOC106611388 other upstream 1218185 39543907 ~ 39557667 (+)
G1981068 NA other upstream 1676863 39036366 ~ 39094814 (+)
LOC110505893 dio2 other upstream 2197317 38565810 ~ 38575881 (+)
G1980792 NA other upstream 2242572 38528607 ~ 38529105 (+)
G1983277 NA other downstream 274029 41047551 ~ 41047902 (+)
G1983387 NA other downstream 441953 41215475 ~ 41216752 (+)
G1983499 NA other downstream 674880 41448402 ~ 41449340 (+)
LOC110505959 LOC106611457 other downstream 966685 41740173 ~ 41757394 (+)

Expression


Co-expression Network