LOC118944424 (LOC106587313)


Basic Information

Item Value
gene id LOC118944424
gene name LOC106587313
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 41660302 ~ 41665080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963626.1
ATGTTTAATTTACCCACAGATTTAGTAAACGTGAAGGGCTGTCCAGGTTTAGAGATTAAGAGGAGATGTGTCATTGTGTTCCAAGGGCACCACACAGTATACTCTACTGTAATATTACATTACCATAGTTTCTGGTATCCCCTAAATCTGACACTCTCTGTTTATATTGTAGAACTTGAAACCATCAGAAAACATGCAGTGGATGTGACTCTAGATCCTGATACAGCACATCCCAAACTCATCCTGTCTGAAGACAGGAAACAAGTTAGATATGGAGACATAAAACAGAATCTCCCTGATAACCCAAAGAGGTTTGATATTGTTCCCTATGTCCTGGGAAAGGAGAGTTTCTCCTCAGGGAGATTCTACTACGAGGTGCAGGTGGAGGGGAAGAATGGGTGGACTTTAGGAGTGGCCAGAGAGTCCATCAACAGGAAGAAGTATATTCGCCTGAAACCTGAGAATGGATGCTGGACTGTTTGGCTGAGGTTTAAAGAATACAAGGCTTTAACTGACCCCTCTGTCGTCCTCTCCCTGAGAGAGAAGCCCCATAAGGTGGGGGTGTTTGTGGATTATGAGAAGGGTCAGGtctcattctacaatgtagaggcCAGGTCTCATATCTACTCCTTCACTGGCTACACCTTCACTGAGAAACTCTATCCATTCTTTTATTCTGGTGCTACTGGTAACTCAGCCCCACAGGTCATCACGCCTGTAGGTGTCACTGACTAACTGTTTTATATCAAACATTGAaatactggttgtgtgtgtgtgcctgtgcgtgtgtgtgtgtgtgcgtgcaagtgtgtgtgttactgtcatGACTTTGCCCTGTTgggtgaggtttatgaccccccccataaatacctgtcccccttttctctccactctacaGAATGGAATCTTGGAAAGCCCTATGTTACCACAGAGAAAGTATGGTAATATCAAAAGGCAGAGGAATGGAACAATAGTTCCCTATCTCAACCAGTTGAAGTGTTcgttggtacttaaagaatatgatgtcagatcagttgttgtctgGGACACTATAtctgatgataggatgacataaattgtatcttggaaagtctacacattctagttatcagattcacatggaattaaatatgaaactatttgtgaaaatatgaaatgtaattttaacttctaaatgagagaattgttttcataCGTAAActatgctcactcagtggccacgcccaagtgaacagacattggttgagaactatgaaacacgcccttctctcccCCAGTACAAAAGTCCATTGACGGAAGTTAACCTTAGTTCCCAATGACGCGGGGCTAATTTCAATATGGAGGTGATGATCACCTCACTGAAATGGTGTATTTCGACTAGACCAGCATAAGCTGATTATGGCAACTTAGTATGAACATTGAACGATTATTTACTGaagaagtgatacatcctagaCTTCAAGTTATCAGCTGCAGCTGTAAACGTATGTGGCCTAGGAAAGGACAGACAATCTCCTAAGAACGACAGGGTACTTTAACGTATCCGCTCTACAACACTACGACCAGAaatattcttcaaaggacaatggCGATCTCTGCTGGGCAAACCAGTCTTCCATCTTCGACCCATCTATCGAAgggcagctcagagtaaatatatatGTTGCATTTTTCTTCACCGAATGGGAGGTTATTAGAAtacataagattctgtatttacggtaGAATAGCTTTTCAAGGTCCGATAGAGACCCAATCCCTTTGTCACTCcatcttcccgctctttcattcaaacccaacccccttctTTTGTGTAACGAGCTGTCATATTGGGTTAGCCCACTAGGGGATTTTCATGACATGATTAGTAATCGATGTATTATCGAtcctgtgtatatatatgtaattctgtgtgattattttggtatttagtaaataaataattacaccAA

Function

NR:

description
butyrophilin subfamily 2 member A2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963626.1 True 1952 mRNA 0.41 3 41660302 41665080

Neighbor

gene id symbol gene type direction distance location
LOC110515873 LOC106562546 coding downstream 92355 41461857 ~ 41567947 (-)
LOC110506810 LOC106562534 coding downstream 220704 41431262 ~ 41439598 (-)
LOC110519559 LOC106562535 coding downstream 676652 40938030 ~ 40983650 (-)
LOC118944423 NA coding downstream 787627 40871432 ~ 40873618 (-)
LOC110519157 slc24a5 coding downstream 828010 40804103 ~ 40832292 (-)
LOC118944452 LOC106587168 coding upstream 117 41665197 ~ 41675473 (-)
LOC118944455 lysm2 coding upstream 58195 41723275 ~ 41738093 (-)
LOC110506143 LOC106562454 coding upstream 89941 41755021 ~ 41779868 (-)
LOC110506142 LOC106562525 coding upstream 162468 41827548 ~ 41862932 (-)
LOC110506831 NA coding upstream 226855 41891935 ~ 41895295 (-)
G2030752 NA non-coding downstream 1191 41658750 ~ 41659111 (-)
G2030746 NA non-coding downstream 20266 41639530 ~ 41640036 (-)
G2030698 NA non-coding downstream 95465 41557155 ~ 41564837 (-)
G2030697 NA non-coding downstream 104349 41554477 ~ 41555953 (-)
G2030678 NA non-coding downstream 116030 41503161 ~ 41544272 (-)
G2030759 NA non-coding upstream 6356 41671436 ~ 41671951 (-)
G2030760 NA non-coding upstream 7184 41672264 ~ 41672685 (-)
G2030764 NA non-coding upstream 15048 41680128 ~ 41680516 (-)
G2030765 NA non-coding upstream 22118 41687198 ~ 41687693 (-)
G2030770 scg3 non-coding upstream 33393 41698473 ~ 41706716 (-)
G2030291 NA other downstream 448450 41211477 ~ 41211852 (-)
G2030156 NA other downstream 753109 40906623 ~ 40907193 (-)
G2030162 NA other downstream 761281 40898470 ~ 40899021 (-)
G2030157 NA other downstream 771618 40887603 ~ 40888684 (-)
LOC110506841 cart other upstream 482280 42147360 ~ 42148871 (-)
LOC118944568 LOC106562433 other upstream 551359 42214901 ~ 42217502 (-)
G2031225 NA other upstream 678202 42343282 ~ 42346725 (-)
G2031259 NA other upstream 703174 42368254 ~ 42369909 (-)
G2031286 LOC106562727 other upstream 794177 42459257 ~ 42461315 (-)

Expression


Co-expression Network