LOC110506162 (serinc4)


Basic Information

Item Value
gene id LOC110506162
gene name serinc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42462581 ~ 42509613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963237.1
gctctgccTAATCTGCCAGGGTAAAGCggagcagggggaggaggggttgagggcattcatcatcaccacctctctctccaactcttctGACAGCGCCCGACACAGAAGCAAAAAGAGAGCACACAGGATATGAGTAAAATAAGTACCCGGACACTTTCTATCCCCCCGAAGTTGGATTGAAGTTGAGGCCGAGATTTAGCAAGGTTGGTTGGATGTGTCTTTGTGTTACATGTGATCCAGGATATAGCAGAGAAGAACTCAGGAAGAACTACCCTGTTGACCCGTTGGAAGTTGGGCACAACAACAAGTAGCGCTTTTGTTTTGTAACGCCGCTACTTATTTTGGGAAAACAATTTGTACTGTTTTAGATGTTAGAGGATCGTTTTCTGGGGACTTTTAGGACGTCATCCTCACAGGGTCTGTGATCTAACACCCAAAGCTGTCAGTTTTGGAGGGTTCTGAACGGATGACAGCCCAGGAGATGCACCAGAGTGGCATCTACAGCTACTTCCTCAACATGTTTGCCTACCAGatATGTTGCTGCTGTGGCCCGGCCCCGTGTTCACTGTGCTGCTCCTTCTGCCCCCCGGTGAAGTCATCGTCCAGCACGAGGATCATGTACACACTCTTCCACATCATGGCCTGCGCCGTCTCCTGTCTCATGCTCTCACGCACTGTCTCCGAGGCTGTCCGGGACAATgTGCCTTTCTTCAACATGGTGTGTGACCAGGCCCATGGCGGAGGGCACTGTGAGATGCTGGTTGGCTACTCAGCGGTCTACAGGGTCTGCTTCGGCACTGCCTGCTTCTACCTGATGATGGCGTTGTTCCTCATCGATGTCAAGTCCAGCCAGGACTTCAGAGCGCTCATCCACAATGGGTTCTGGTTTCTGAAGTTCATCACCCTGCTTGGGATGTGTACTGCTGCCTTCTTCATCCCTACTGAGTCCTTCCTGCATGcctggcACTACGTAGGCGTGGTGGGAGGATTTGCCTTCATCCTCATCCAACTCAGTCTCATCACAGCATTTGCCCACACCTGGAACAAGAACTGGTTAACAGGAGCGGCAGAGGACAAGCGCTGGTACCTGGCGGTGATGTGTGCCACCCTGTTCTTCTACAGCATCGCCACCATGGCCTTCACCTTCATGTATAAGTACTACACCCACCCCACCGCCTGCCAGTCCAACAAGGTCCTGCTGTGGACCAACCTGACCCTGTGTGGCATCATGTCCTTCATCGCCGTCACGCCCTGTGTACAGCAGAAACAGCCTCGTTCAGGGCTCCTGCAGGCTTCCATCATCAGCTGCTACGTCATGTATCTCACCTTGTCTGCCCTGTCCAGCCGGCCCCCAGAGAAAATGGTGTACCAGGGGGTGAATATGACAGTATGTTACCCCAGTGTGGGTCAGGATGGCATCCAGAAGGAGACCAACGCGGTGGCCATTATAGGAGCTGCCATCATGTACTGCTGTGTGCTCTTCGCCTGTAACGAAGCATCCTACCTGGCAGAGGTTTTTGGCCCTTTCTGGATGATCAAAGTTTACCGCTATGAGTTCCAGAAAGCCACATGCTGCTTCTGCTGCCCTGACAAAGAGGAAGAGGTGGAGTTTGTGATTGACGAAGATATCAAGGGCTGCCAGAAGGTGATTCACAACGAGAACCAGAGAGTGGCTTACAGCTACTTCTTCTTCCACTTCGTCTTCTTCCTGGCCTCGCTCTACGTCATGATGACCCTAACCAACTGGTTCAGCTATGAGTCAGCGGTGCTGGAGACCACGTTCACCCACGGCAGCTGGTCCACGTTCTGGGTGAAAATGTCATCGTGTTGGGCATGCGTGGTACTCTACCTCTGGCTGCTGCTGAGCCCACTCTGCCACTGTGGCTCCGACTCGCACCGCCCGCGACGTTCCCGCATTAAACGCCGCTCAGCCAACTCCTCCAGTCACGTCAGTGTCAGCGTCTGACCTGTGACCTTTGAGTCAGAGCCTGGCTTCTGGGGGTGGAGAACAGGATAGGACAGCTAGCAGGAGAAGATGGACAATTTCCCCCGCTGTGGTACCCGGAAGGTGGAGGATGGTTTTGATGATATCCCCTTGAACCCTCCACCAGTCTCCCATATTGAAGTCGGATGTCAGGGGACAGAGATGAGAGGTCATGGGTCATTGAGACTCACTCCAGCTAGAAggacagactaacagactaacCAGAGGATTAATGAATGAATCTGATGTTCCTCACACAGACCACCTGAACCTCCAAACATAGACCAAGAGACTAACCAGACTGTGCTCTGAAACAGGAACAAAGACCCTATACAGAATCACTACATCCTGCCATCCAAACTGATTTCACAACATTTCACTATTGTTTCACTCGGTAAGTGAAgtattcagtctggtttaaccaggctagaaCCACTATGGACTACTATGCTGAGACTGCCAAAAGGGAACAAAAAGGATGAGCTCTTGACTCGCTTACGACGGGAGCTGTAGGGAAATGTTGGCTGACTTTTTACTCTTTTTGAATATTTTATTTCTTATAGTAAGGACTGTGTACCATTTTTAAAATTACAACCGGGGGTAGATTTGTCAGTAGGATCATTATTTTTCTCAGTGGTTTCAACAACTGAAGATTTACCTGAACATTTCACACCATTTCGAAGGTTTACATGAACATTTTGCACATTAGTGTGTTCATACTGTTTGAATATGTTCGCTCTGGTGTTGAGCTAATGTGaatgataaaataaaatattacttAACACTTTCGCCAACAGGTATAATGCTATATTACTTGTTATAAGCATGTATGAGCCTTTATAATGCCTTACAATAAGGCCTATACTGTTTTATGTTGGCCGAGCAAATTTCCAACGGACCTAATGGCTTATATAGTCAGGATCATTATGAGTTGATTACAACACATTATAAGGGGTTCATATATGTTCATGACAAGTCTTTCAATGCATTATATCTGTCGGCTTTAAGtaaaatgttaccaaatactCTTATACCAATTATTTATTTCGCAATGCCTTTTTAACATCGTTGGAGTGGTGTATCCATTTCTATATTGGTTTTTGAAAGGAAAATGTGGTAAAATTGTTTTGGCAGTTAAGTTTTACAAGAAACCCCAGCTACAAGACCCTGACATGTCTGGTTTAAAGGGGCTCTCTATGATCTGGGGTGTATTTGCTAGGAACAGAATGGAAACAAATGTGCCGAAACGGGAAGAAACGCTTGTTTGGTATTCACATTTGAAAATGCTTCGCTACGGAGTGCACTAATGAATGCACCCGTGTTTTAGAAGAACCATTGAGGATCGAGAGCCAAGTTTCTGTGAAGACTTCTACACAGTTAATGACCAATAATTTGACTCTGTAAAACCTTTGTGTACGATACTGCATTTAGGTCCTTTTTTAGCTAATTTCATGTTACTATGATAGCAGGTGTGTGAAGTTAtttttgtaaatacattttataatgaaACACAGCTTCTGTTGATTAAAGTGTGATATTTTTGTAAGCGAACAACCCCTAAAATCACATTGGATTCCAATTAGTTTCCCAAATTCCATTTTCTCCCTTTTGTATTtttcaggttttcgctctcagAAATCACgcctttttaaattattttttttacacataaCAACAAAAATGGATGAtccaagtccacaacaatgcttgaACCACATCAGGgcaccacttttgaggtctgtgAAAAATAGAAAACAATTTAGATTTAAATTACCCTTTAATGCAACTGTGCACCAGCAAGAGACTGTTTGGTTAGTGATGTTTATGTGGTGCTCATATGATTGCAGAATTTgctaaacaaatggccactggattgatgcaaataatcatatGATTCGGCcaggtaggcataggctactttgtagttaacatttaattgagaaggttttgggaAAAGCCTTTCTATCTCTACCAGAAGACGTTTATCATTACCATCATTGCTaatggctacacaaagtgtagacatatgcacgcacacacacacacactccttttccAACTCAGAAAGTTGCTGGATAATACGAATCACATTCTGACTGAACAGAATAGGCTACACACGCTCATTCAAATTCAAATATCTAAACTACAGTTGTTGCGTGTGAAAAGGTTTCACGTACAAAAAATAAAAAGTCAATGTGCATCAGCGTTTCTTCTTTCCCTACTCTCGCTTCGCTTGTTAGATATTAAGCACATTGATAGTTCGCTAGCAAACCTCTCCTGTTGATGTA
>XM_036963238.1
GGTTGGATTAAAGGGTACTCCGCACACCTAGGCCTATTTCTGTCTTGCATAAGAGGTTTACAGTACTTTAATACTCGGAGTCCCAACAACCTGGCCAACCTCCTACGTTTCTCTCTTGATCCCCCCACAATAGTTTTCCCGCCTcatgtacactacactacacttacCAATCAATCCAATTTATTTTAATCGGCTTAATCCTAAAAAGTAGAGAAACCTTCCTTGATCACATCTGAAGCCAAAATCTCTTTGACTGGCTCTCCCTCTCAGGGTGTTTGCCTTGTACATCATCCATGCCTGTCTGTTGGGGGAGATGTGTGGGATGATCGATGGGGCCCAGAGAAATGGTGGTGCTGGGGCTTATTAATGAAAAACAGGAGGGTGATATGCATATACTAAACTTGAGTGTTTCCGGGCTTGTTAACTCTGTACTGCTGTCCCAGTACCCCTTTCATCCTGATTTATGATTGACCGTTGAGAGCCAGTGGACCTGGAGCTTCGTCGCCCCCCTCAGTGCCTGCTGCACCAGTCTGGGAAGTAATGTTGTGTCGCTGTCTCTGTACTCAGatATGTTGCTGCTGTGGCCCGGCCCCGTGTTCACTGTGCTGCTCCTTCTGCCCCCCGGTGAAGTCATCGTCCAGCACGAGGATCATGTACACACTCTTCCACATCATGGCCTGCGCCGTCTCCTGTCTCATGCTCTCACGCACTGTCTCCGAGGCTGTCCGGGACAATgTGCCTTTCTTCAACATGGTGTGTGACCAGGCCCATGGCGGAGGGCACTGTGAGATGCTGGTTGGCTACTCAGCGGTCTACAGGGTCTGCTTCGGCACTGCCTGCTTCTACCTGATGATGGCGTTGTTCCTCATCGATGTCAAGTCCAGCCAGGACTTCAGAGCGCTCATCCACAATGGGTTCTGGTTTCTGAAGTTCATCACCCTGCTTGGGATGTGTACTGCTGCCTTCTTCATCCCTACTGAGTCCTTCCTGCATGcctggcACTACGTAGGCGTGGTGGGAGGATTTGCCTTCATCCTCATCCAACTCAGTCTCATCACAGCATTTGCCCACACCTGGAACAAGAACTGGTTAACAGGAGCGGCAGAGGACAAGCGCTGGTACCTGGCGGTGATGTGTGCCACCCTGTTCTTCTACAGCATCGCCACCATGGCCTTCACCTTCATGTATAAGTACTACACCCACCCCACCGCCTGCCAGTCCAACAAGGTCCTGCTGTGGACCAACCTGACCCTGTGTGGCATCATGTCCTTCATCGCCGTCACGCCCTGTGTACAGCAGAAACAGCCTCGTTCAGGGCTCCTGCAGGCTTCCATCATCAGCTGCTACGTCATGTATCTCACCTTGTCTGCCCTGTCCAGCCGGCCCCCAGAGAAAATGGTGTACCAGGGGGTGAATATGACAGTATGTTACCCCAGTGTGGGTCAGGATGGCATCCAGAAGGAGACCAACGCGGTGGCCATTATAGGAGCTGCCATCATGTACTGCTGTGTGCTCTTCGCCTGTAACGAAGCATCCTACCTGGCAGAGGTTTTTGGCCCTTTCTGGATGATCAAAGTTTACCGCTATGAGTTCCAGAAAGCCACATGCTGCTTCTGCTGCCCTGACAAAGAGGAAGAGGTGGAGTTTGTGATTGACGAAGATATCAAGGGCTGCCAGAAGGTGATTCACAACGAGAACCAGAGAGTGGCTTACAGCTACTTCTTCTTCCACTTCGTCTTCTTCCTGGCCTCGCTCTACGTCATGATGACCCTAACCAACTGGTTCAGCTATGAGTCAGCGGTGCTGGAGACCACGTTCACCCACGGCAGCTGGTCCACGTTCTGGGTGAAAATGTCATCGTGTTGGGCATGCGTGGTACTCTACCTCTGGCTGCTGCTGAGCCCACTCTGCCACTGTGGCTCCGACTCGCACCGCCCGCGACGTTCCCGCATTAAACGCCGCTCAGCCAACTCCTCCAGTCACGTCAGTGTCAGCGTCTGACCTGTGACCTTTGAGTCAGAGCCTGGCTTCTGGGGGTGGAGAACAGGATAGGACAGCTAGCAGGAGAAGATGGACAATTTCCCCCGCTGTGGTACCCGGAAGGTGGAGGATGGTTTTGATGATATCCCCTTGAACCCTCCACCAGTCTCCCATATTGAAGTCGGATGTCAGGGGACAGAGATGAGAGGTCATGGGTCATTGAGACTCACTCCAGCTAGAAggacagactaacagactaacCAGAGGATTAATGAATGAATCTGATGTTCCTCACACAGACCACCTGAACCTCCAAACATAGACCAAGAGACTAACCAGACTGTGCTCTGAAACAGGAACAAAGACCCTATACAGAATCACTACATCCTGCCATCCAAACTGATTTCACAACATTTCACTATTGTTTCACTCGGTAAGTGAAgtattcagtctggtttaaccaggctagaaCCACTATGGACTACTATGCTGAGACTGCCAAAAGGGAACAAAAAGGATGAGCTCTTGACTCGCTTACGACGGGAGCTGTAGGGAAATGTTGGCTGACTTTTTACTCTTTTTGAATATTTTATTTCTTATAGTAAGGACTGTGTACCATTTTTAAAATTACAACCGGGGGTAGATTTGTCAGTAGGATCATTATTTTTCTCAGTGGTTTCAACAACTGAAGATTTACCTGAACATTTCACACCATTTCGAAGGTTTACATGAACATTTTGCACATTAGTGTGTTCATACTGTTTGAATATGTTCGCTCTGGTGTTGAGCTAATGTGaatgataaaataaaatattacttAACACTTTCGCCAACAGGTATAATGCTATATTACTTGTTATAAGCATGTATGAGCCTTTATAATGCCTTACAATAAGGCCTATACTGTTTTATGTTGGCCGAGCAAATTTCCAACGGACCTAATGGCTTATATAGTCAGGATCATTATGAGTTGATTACAACACATTATAAGGGGTTCATATATGTTCATGACAAGTCTTTCAATGCATTATATCTGTCGGCTTTAAGtaaaatgttaccaaatactCTTATACCAATTATTTATTTCGCAATGCCTTTTTAACATCGTTGGAGTGGTGTATCCATTTCTATATTGGTTTTTGAAAGGAAAATGTGGTAAAATTGTTTTGGCAGTTAAGTTTTACAAGAAACCCCAGCTACAAGACCCTGACATGTCTGGTTTAAAGGGGCTCTCTATGATCTGGGGTGTATTTGCTAGGAACAGAATGGAAACAAATGTGCCGAAACGGGAAGAAACGCTTGTTTGGTATTCACATTTGAAAATGCTTCGCTACGGAGTGCACTAATGAATGCACCCGTGTTTTAGAAGAACCATTGAGGATCGAGAGCCAAGTTTCTGTGAAGACTTCTACACAGTTAATGACCAATAATTTGACTCTGTAAAACCTTTGTGTACGATACTGCATTTAGGTCCTTTTTTAGCTAATTTCATGTTACTATGATAGCAGGTGTGTGAAGTTAtttttgtaaatacattttataatgaaACACAGCTTCTGTTGATTAAAGTGTGATATTTTTGTAAGCGAACAACCCCTAAAATCACATTGGATTCCAATTAGTTTCCCAAATTCCATTTTCTCCCTTTTGTATTtttcaggttttcgctctcagAAATCACgcctttttaaattattttttttacacataaCAACAAAAATGGATGAtccaagtccacaacaatgcttgaACCACATCAGGgcaccacttttgaggtctgtgAAAAATAGAAAACAATTTAGATTTAAATTACCCTTTAATGCAACTGTGCACCAGCAAGAGACTGTTTGGTTAGTGATGTTTATGTGGTGCTCATATGATTGCAGAATTTgctaaacaaatggccactggattgatgcaaataatcatatGATTCGGCcaggtaggcataggctactttgtagttaacatttaattgagaaggttttgggaAAAGCCTTTCTATCTCTACCAGAAGACGTTTATCATTACCATCATTGCTaatggctacacaaagtgtagacatatgcacgcacacacacacacactccttttccAACTCAGAAAGTTGCTGGATAATACGAATCACATTCTGACTGAACAGAATAGGCTACACACGCTCATTCAAATTCAAATATCTAAACTACAGTTGTTGCGTGTGAAAAGGTTTCACGTACAAAAAATAAAAAGTCAATGTGCATCAGCGTTTCTTCTTTCCCTACTCTCGCTTCGCTTGTTAGATATTAAGCACATTGATAGTTCGCTAGCAAACCTCTCCTGTTGATGTA

Function

symbol description
serinc4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SERINC4 (serine incorporator 4).

NR:

description
PREDICTED: serine incorporator 4

GO: NA

KEGG:

id description
K24177 SERINC4_5; serine incorporator 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963237.1 False 4272 mRNA 0.45 12 42462581 42502104
XM_036963238.1 True 4307 mRNA 0.45 12 42462581 42509613

Neighbor

gene id symbol gene type direction distance location
LOC118944568 LOC106562433 coding downstream 245079 42214901 ~ 42217502 (-)
LOC110506841 cart coding downstream 313715 42147360 ~ 42148871 (-)
LOC118944459 tubgcp4 coding downstream 324577 42118421 ~ 42138004 (-)
LOC110506147 bend2 coding downstream 392109 42067732 ~ 42070472 (-)
LOC110506148 LOC106587747 coding downstream 406013 41986285 ~ 42056568 (-)
LOC110506854 mfap1 coding upstream 2667 42512280 ~ 42516373 (-)
LOC110526670 NA coding upstream 14968 42524581 ~ 42526465 (-)
LOC110518657 LOC106587629 coding upstream 38736 42548349 ~ 42551080 (-)
LOC110526673 LOC106562627 coding upstream 41599 42551212 ~ 42554509 (-)
LOC118944434 NA coding upstream 54636 42564249 ~ 42565690 (-)
G2031287 NA non-coding downstream 218 42461976 ~ 42462363 (-)
G2031307 NA non-coding downstream 3790 42458567 ~ 42458791 (-)
G2031306 NA non-coding downstream 4070 42458159 ~ 42458511 (-)
G2031227 NA non-coding downstream 4661 42456845 ~ 42457920 (-)
G2031281 NA non-coding downstream 43726 42417395 ~ 42418855 (-)
G2031323 NA non-coding upstream 14257 42523870 ~ 42524088 (-)
G2031342 NA non-coding upstream 47739 42557352 ~ 42557581 (-)
G2031357 NA non-coding upstream 77988 42587601 ~ 42587854 (-)
G2031332 NA non-coding upstream 78725 42588338 ~ 42588647 (-)
G2031518 NA non-coding upstream 81660 42591273 ~ 42591501 (-)
G2031286 LOC106562727 other downstream 1266 42459257 ~ 42461315 (-)
G2031259 NA other downstream 92672 42368254 ~ 42369909 (-)
G2031225 NA other downstream 115856 42343282 ~ 42346725 (-)
G2031343 NA other upstream 48184 42557797 ~ 42558903 (-)
LOC110513924 rasl12 other upstream 106631 42616181 ~ 42958849 (-)
G2031974 NA other upstream 675023 43184636 ~ 43185724 (-)
LOC110506858 LOC106562715 other upstream 682085 43180007 ~ 43198177 (-)
G2032150 NA other upstream 1059547 43569160 ~ 43570054 (-)

Expression


Co-expression Network