LOC110508002 (LOC106581401)


Basic Information

Item Value
gene id LOC110508002
gene name LOC106581401
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 38619550 ~ 38628170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588440.2
TCTCTGAGCACCGCCGACACCATCCAGAACCAACGGCAACGTCCCTTCCATCTTTCCCTCGTTATTCCCCCTCTCTCGCcattcgctccctctctcttcactttAAACTCATTCCCGTGATCTCTAAAGAAGAGCCGACCGAGAAAGAGTCTTTGCTGTGATCCACAGAGGGTTAGCGCATCGGACAGTGCTGGGAAGTTTAAGCCAAAAGGAGAGTGCAATTTTGCCTGGCTGCACTGTTGAACGTTCGTCGAGAGAAGCAAGCAAGCTGAGGACCTGCATCATAAGCAAAGTGGATTGAAAAAATAGAGAACATTGTATTCCAATCACgtcttcattttctctctctcctgccagagcgggaggagagagagagagaaagaaagagagagagagagctcaacgGGAAAATATcgtaggaagagaggaagaggagatagagagagagagagagagagagagagagagagattcaacaATATTTAAACTAGTGGCGTTTTTTTCCCGAATGCTGTTAAATTGCAGTGCCAAAGTAAGCCCGTAACGGAAGACCGGGATATCTCACCTTCCCCGCCACAAGGGCACCTCACACGCAGGAGATGTGAAGTCAGATCCCCTTAAACTGATGCTGTGAAGTGGCTTGCCATAGCCGTGACTTCATCAGGTCTCAGTAAGGATGCTGTGGGTTACCTTGCTGAGCACCATAGCCTTAGGATGGACCACCCCAATCCCACTGCTGGAGGACTCGGAGGAGATCGACGAGCCCTGCTTCGAGCCCTGCTACTGCCAAGTCAAAGAGGGCGTATTTCACGTCCACTGCGACAGCAAAGGATTTACGAACGTCAGTCAGATCTCCCAGATATGGACACGGCCCTTCAAACTCAACCTGCAGAGGAACTCCATGAGGAAGCTGTACTTCAACAGTTTTCTTCACCTCAACAACGCCGTATCCATTAATCTGGGGAATAATGCACTTCAGGACATCCACGCCGGAGCATTTAACGGATTGGGAATTCTGAAACGGCTGTTCCTGCATGAGAACAAACTAGAGGTTTTCCGTAATGACACCTTCCTGGGTCTGGAAAGCTTGGAATACCTGCAGGCAGACTATAATGTCATcaagaggatagagagtggagCGTTCAGGCACCTCCACAAACTCAGAGTGCTCATTCTAAATGACAATCTGATACCAGTCCTGCCCTGCTACCTATTCAGGTCGGTGTCACTAACACACCTGGACCTGAGGGGAAACCGGTTAAAGACATTACCATATAAGGGCACGTTGGAATATGTGGGGCGGAGCCTGATGGAGATTCAGCTAGAGGAGAATCCATGGATCTGTGAGTGTGATATAGTTCAGCTAAAAACATGGTTGGAACGCGTTCCCTACACAGCACTGGTAGGAGAGATCACCTGCGAGTACCCCTTCCACTTGCACGGGAAAGATTTACGAGAGATCAAACGCAGTGAGCTCTGTCCGTTACTTTCAGACGTGGAAATCGAGGTCAAACTGGGAATCCCCCGGTCTCCGTTTAACAACGAGAACACGTGGCCAACGAAACCTTCCTCCATGCTGTCTTCGTTCCACAACACGGCGTCGTCTGTGGAGTACAAAGAGAGACATGTCAAACCCACCAAGCGGCCCAGGCCCACCAAAAACCCTCCCACCCCTCGTAGTCTCTACCCCGGCCAGAACCAGCCCCCCATAGCTGGCTACCAGACCCGCCCCCCCAtccccatcgtctgcccttctggATGTATCTGCAACCTCCATATCAACGACCTGGGGCTAACGGTCAACTGTAAAGAGAAGGGCTTTCATAATATCTCAGAGCTCCTGCCCAGGCCCCTAAATGCCAAGAAACTTTACCTGAGCGGGAATCTAATACAGAAAATCTACCGGTCTGATTTCTGGAACTTTTCCAGTTTGGATTTACTACACTTGGGGAATAACCGGATATCGTATGTCCAGGAAGGGGCGTTTATCAACCTTCCCAACCTGAAGAGTTTGTATCTGAATGGGAACGACATTGAGAGGCTAACCCCCGGTATGTTCCGGGGCTTACAGACGTTGAGTTATCTTTATTTTGAGTATAACGTGATTCGTGAGATCCAGCCGGCGTCATTCTCTCTCATGCCCAGCCTTCAGCTTGTTTTCCTCAATGATAACCTCCTCCGCACCCTCCCCACCGACGCCTTCGCAGGTACAAGCCTGGCTCGACTCAACCTCCGCAATAACTACTTCCTGTCCCTGCCCGTGCGTGGTGTTCTAGAACACCTGCATTCCATCGTCCAGGTGGACCTTCATCAGAACCCCTGGGACTGCTCCTGTGACATCATCCCCCTCAAAATctggatggagaagctgtctacTGTCATCATGGTTAGTGATGTCATCTGTAAGACTCCTGATTTTGCCTTTGGGAAGGATCTGAGGTCGCTGGATGCTGAGATCATCTGTCCAGAGATGAAATTCTCATCCGGACCCTCCCCAGCTCTCCTCCCCTCTGATGACATGACCACCGGTAGCTCTGGTCTGGGGGAGGCTGTGGGGAGGGGGCCGGTGCCTCTATCAGTCCTCATCCTCAGTCTTCTCGTTCTGTTCATCTCAGCGGTTTTCGTGGCCGCGGGCCTCTTCGCCTTCGTCCTGCGGAGAAGGAAGAAGCTGCCCTTCCGGAAACGCTCTGAGGTGGATCTGACAGGAATCCAGATGCAGTGCAGGATATTTGAGGATCCGCCGAGACAGACCAGCAGTGGAAGCGTAGGCTCACCAGAAAAGCCACCCAgcggacacacacatacacattcacacactcatggTCACGTtggccacacacacagtcacggtCACGTCTATGATTACATTCCTCACCCTGTGACGCAGATGTGCAACAACCCCATTTACAAGCCccgagagggggagataggggagCAGTTTGCAGAAACAAAAGAGAACAACAGTAATTACCGAACCCTcttagagaaggagagagaatggaccCTAGCCATGTCTAACTCACAGCTCAACACTATCGTCACGGTAAACCACAATACAGGGGATAAATCAGGATTTCACGAGAACGGCGGACTGTGTCCCACCGTGATTGACAGCCAGAGACCCAAGCCGACTGTTGGCTTCGTAGACTGTCTGTATGGAACGGTCCCGAAACTAAAGGATATGCACGTCGCACACGCACACCCACCCGGTATGCAATACCCGGACTTACAACAGGACGCACGTCTCAAGGAGACGTTGCTGTTCACAGCGGGTAAAGGCTGCTTCCCTGACCCATCCCAAAGCGATTATCTTGAGTTAAGAGCCAAACTCCAAACAAAGCCGGATTACCTCGAAGTACTGGAGAAATCATATCGGTTCTAACACACAGAGAATAGCATAGGCTACATACAAAGACACACTCTCACTTTTCCATAACCCAAACGGAACAAAATCACGGACAAAAACGAAACAAAAAAGCAGCATGATATTAAAATTAAAAAGTATATTACTAAACGTTTTCCCACCAAAATCGCTTTGGAGGAAAGGCCATTCTCAGATATTCAATGAAGTGCCTTTTTTCAGAGTAGCCAGCAATGTTATCAACCCTTATTTTTATATGGAACAGATTGGTCTATATACCAAGGAGGGTGAGAGACCAAGAAAGAGAGGCACCGGGAGAATCACAACATCCGAAAATATACCCCATCAAATCGAGCCCTTCATACGATCTCAAAAGGTGGAGTGGAGTAACCCCGTGCGCGAGAGGAGCTGGAGCAGGATCTCTCCGTGTCCGTTGGGctcatgtttctgtctctctgtcttctacgtGGATATATCAACGCCCGGGTTCCGTGCACATGAAGTTTGtaggaaataaataaaaaaataaaaatggatgaATTTGCAGTTTGCTGCATGCACTCGCTCCCATTGCAGCGGTGAGGGATTTGCTCAGAACTATCAGTCACGTGTTAATAGCGATACTGTAACACATTATGGTTCAGTGTTCTATTTCATTTTATATAttagtatcattattattattattattattaaagagGACTACTATCTATATCTGGGTGCAATTCTCAAGGACGTACTCACCCAAGGATGAAAATAACATTTGTGAATATATTATATGATGACGCTCAAGGTTTTCTGGAATTTCACGCACTTTCTTAAGAACAATGCTTCGGATTATCTCATCGACACTACCGGCTTTGTAGGAGGCACTTTTAATGTTTTCTCTCTCACAAAGATTTGAAGAAAATATCTGCATATATTTATTCTGTAATTTCAGTGAACATTTTATTGTAAAGGTAATGTTAAATCAATGTATAGTGAATATGCGTCTGGTATAGCCTTCTTAATAAAAACTCTGAAATGAAAAGGGTGCTACCACGGAACGTTTGTGAACAACGTAGAGGTAATGTGTTTGGTATAGCGCTATACtgtgctgtgtctgtctgtgcattGCAGAATGATACATTGACATTTCTAGTGGCTTGATTACATTTTTAGTTGTGCTGTTGTTGGCAAGGATATGTGAATTCCGCTACTACTCTGCAATGGTAGCCTACTTAAAGTAGGCTCGAGTCGGGAAGGCGTGCAACTATGAGTGTAGCTGGTGATACaaatgagagaaagagggggatacATCATTGGGAGATGCAGAATTGAAAATGGCCCAATGAATGAATCAAGTTTTGTCCGATGGGTGATATAAATGCACCATTGTGTTCCCATTTTCTTGCTACAGTTTTCATATGAATGTTCAACGAATTATCTAGAAAGGCCGCGAGTCTGAACGAGAGACATACTCTCCAGTGCGCACTTGATGCTCATTCGCTGCAGAATGACATTACAGATATTGTCCACACGAGGGCGACAGAGGGACACTCAGATTGCCAGTTCAATAACTGTACTGCTGGTTTGTTAGAAAACTTTTGCCAGACTGTTCTCCTATCATTAGACTGCAATACATTTAATCCACTACCAAATTAAACACTAGGCCTGAACATTATTAAATATGGTCCATTATATTTGTTCAAATTTAAATACAATAATCATCAGAGAACATTACTTTTGCTTTGTATCATTAATGAGATCAGTAGAATCTGAGGACTTTTTATTAATCCCGTGCAGGTAATATAATGGTTATTGTTATGTAAAGGATGTTCTATATCGATCATGtatttttgaatggccttaaataGGGAGAACACACGTGACAGGGAAATGGGTTTCAAGCAATGTCATTCAACTCAAACCAATTGATAATTTGAAGTTCCATATCatgtaaaggcccagtgcagtcaaaaacggaTTTCAATATGTTTTATACATATATTTCCActctatgaggttggaataacacTGTATGATTGTGAATATTATAATAATGCACTTTTAGTTTAAGAGCTGTTGTAAAAGAACGCCTGAAATTTCACCCTTTTcgggtgggatggagttttggtctgcctggtgacatcatcaGGTGGTAAATAGACGAATAATAAAGAGTGTTCCGAACCTCCCTGCCAATAAGAGCTATTTTTCTCTGTTCCCCTCCcatctcagaccactcccagacaattCTAGCAAAATTCCTGATCGAGgactttgttatttttttgttgtttcttaTTTTTGTTTCTTATTGACCATTTTACTTGAAAatagtcacagtaaggtacttaattgttacccagaattgatttgatgttgagataaaaatggctgcattggacctttaagacgTTACTTGTTGGTTGGGGGCGGAGCCAGAAAAGGAGGTAATTTAGACAGATAAGGAGAGGTTGTATTGGACCTTTAAGACGTTACTTGTTGGTTGGGGGCGGAGCCAGAAAAGGAGGTAATTTAGACAGATAAGGAGAGGTTGTATTGGACCTTTAAGATGTTACTTGTTGGTTGGGGGCGGAGCCAGAGAAGGAGGTAATTTAGACAGATAAGGAGATGTTGCATTTTGCAGGAAAGTTGAGTGATCTTGAAGAGATATTAATGTTGAAAGGAATGTCATGTCCATCTGTAAtttaatttattatttatttgtcaTCAGGAGCACAAAACTACGTATATATGTTTCTATCACAGTCACTGTCACCCCATTTGACAATCGGTctctaacaaaaacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacatcaaatgaGTATACACAATGAGCAGGCCTTCATTATTAGCACTGTAGCATCACATTAGGCCAAGGTCTATAATATTTAGTTTGtctaccccaccccacccctccatccccatTCCTCCTCCCCAACCAGACTGATTGAGGTCAGCACTTTTCTGCATGCACTCTGTTTGATTTAAACAAACCTGAATTATTCTATTATAAACGATACGTAGGGTTCCATAATGATCCACCTTGATATTTCTGTGATTCAGTAAGGTGACAGGGCCCACTATTTTCATTCATGTTATTTGGGGCTTAATTGACTCTCTGTTTGGTTCCGACCACACATGCGCTTGTTGATTATATTCTAATAAATCCTATTGTTATCCTA

Function

NR:

description
SLIT and NTRK-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588440.2 True 6599 mRNA 0.45 3 38619550 38628170

Neighbor

gene id symbol gene type direction distance location
LOC110507217 NA coding upstream 144951 38469918 ~ 38474599 (+)
LOC110508017 NA coding upstream 559437 38052633 ~ 38060113 (+)
LOC110508012 LOC106581399 coding upstream 1050677 37536529 ~ 37568873 (+)
trnat-agu-152 NA coding upstream 1113748 37505729 ~ 37505802 (+)
trnat-agu-151 NA coding upstream 1113916 37505561 ~ 37505634 (+)
LOC118944799 NA coding downstream 411403 39039573 ~ 39039625 (+)
LOC110508028 neus coding downstream 1039819 39667989 ~ 39681560 (+)
LOC110507222 LOC106581437 coding downstream 1066391 39694561 ~ 39701212 (+)
LOC110507223 LOC106613251 coding downstream 1153019 39781189 ~ 39938079 (+)
ssr3 LOC106581450 coding downstream 1666661 40294831 ~ 40297552 (+)
G2080782 NA non-coding upstream 1668 38617554 ~ 38617882 (+)
G2080781 NA non-coding upstream 2122 38616798 ~ 38617428 (+)
G2080780 NA non-coding upstream 6386 38612775 ~ 38613164 (+)
G2080777 NA non-coding upstream 12388 38606820 ~ 38607162 (+)
G2080763 NA non-coding upstream 23569 38595676 ~ 38595981 (+)
G2080793 NA non-coding downstream 2590 38630760 ~ 38631559 (+)
G2080824 NA non-coding downstream 47757 38675927 ~ 38677288 (+)
G2080885 NA non-coding downstream 177951 38806121 ~ 38806353 (+)
G2080987 NA non-coding downstream 187413 38815583 ~ 38818121 (+)
G2080988 NA non-coding downstream 188721 38816891 ~ 38817384 (+)
G2080014 NA other upstream 674399 37944932 ~ 37945151 (+)
G2079657 NA other upstream 800264 37815848 ~ 37819286 (+)
G2079468 LOC106581367 other upstream 1251414 37366739 ~ 37368136 (+)
G2079197 NA other upstream 1338718 37279105 ~ 37280832 (+)
LOC110536894 NA other upstream 1342693 37031161 ~ 37276857 (+)
G2081884 LOC106581433 other downstream 1199488 39827658 ~ 39837383 (+)
G2081949 NA other downstream 1303704 39931874 ~ 39933835 (+)
G2082162 NA other downstream 1329045 39957215 ~ 39957751 (+)
LOC110508042 LOC106613262 other downstream 2215344 40840706 ~ 40847141 (+)

Expression


Co-expression Network