G2079468 (LOC106581367)


Basic Information

Item Value
gene id G2079468
gene name LOC106581367
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37366739 ~ 37368136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2377712
AGTAGCCTGTACATACATGGCAGAGATATTACACAATGAAGATGCAGGAAAACATACAACTGAAAATCTTTCCAGAGATTAAAGCTAACTATGACCCTTGACCCTATACCAAATACTCAATGATCACTTAGACCGTCACAATAACAGAGCAGTTATTCAGTACTCATTAGCCCCTCCAAGCAATTACTTCTCCCTTCTTAAGCAGTGTTATTGAAGAGTTTAATTCCAAAATGCTATATCCACCAATTTTTCATGTGTGCTTTTTCATGAGAAAAGATTGCTCATCATGGGTAACACTATATAACCATTGTTTAGCTAGAATGGAATGTTCGTACCCTGTATATTTGacagtgatatgtggttgtctcgccTAGCTAGCTTAAGATGAacgcactaactgtaagtcgctctgcatAAGAGCATCTGTTAATAAACAAAAATGTTAAAAAAGTAAATGTTTTACAaacagatctcatattactgtatttAATGACTTTAAAAATGTAATATTGATGTATCAATTGTATAATTTATACTGttctttataaaaaaaatgttattatttATTACTTTtaactgtgtaaaacctagcagtcctACTTCTTTCTCTTAGAGTGAGGAGGATATATAGCATTTTGCTATAACAACATGGTTATTTGTCTCTCTAAAATGAAACTGTCAAGCGATAGATTTATTTTAGATACATGTCTGTCACTAAACAACCCCATGGCATGATTAGACAGtgaagaaacacacaaacacccctGCCCATCCTTAGGGGGGAGAAGTTGCTGCTTGACTCCCAGcgtacccctccctccctctgttcctagCAGCTGGTGCTGGAGATGGCCAGGAGATTTTCGGTGACAGCAGGTTTCCCATCGTCACcatcctttcccctctcctcctcccccagtgcGGCCAGCAGGTCCCAAGAGCAGGGCAGCAGGCGGTGGCTGAAGGCCAGGGTGGCCAGGCTGGAGGCTAGGGGGATACACACAAGAGATGACAACATCACCAGAGTCCTGAAGGGGAAGTACTGGTGGAtgactcctccctcctccctccaaccAGGGAACAGGAGGGCCGTTGGAAGCCGGATGAGAGGCTCTCCACTCAGCAGCCTCAGAGTGACTGCCACAAGGTAACCAGAGGTAGCACCGTAGCCATTAGCACAGCGGCAGTGAAGAACACAGATCAGCTGGGGGAAGACCACGCAGTAGATGAGGTCTCCACTGATCAGCCAGAAGGCAAACACACTGTCCTCAGCAAACGCCAGGCCTGTACCAGCCAGTCCCACCAGCAACACACTGATAcggatcacccacacacacactccctgtccgacgcctgagagagagagagagagagagagagagagagagagagagagag

Function

NR:

description
high affinity choline transporter 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2377712 True 1398 TUCP 0.45 1 37366739 37368136

Neighbor

gene id symbol gene type direction distance location
mre11a mre11a coding upstream 9133 37318716 ~ 37357606 (+)
LOC110536894 NA coding upstream 91657 37031161 ~ 37276857 (+)
LOC110507948 LOC106581405 coding upstream 502772 36707926 ~ 36863967 (+)
LOC118936607 LOC106581404 coding upstream 663216 36678773 ~ 36703523 (+)
LOC118944683 NA coding upstream 748013 36610735 ~ 36618726 (+)
trnat-agu-151 NA coding downstream 137425 37505561 ~ 37505634 (+)
trnat-agu-152 NA coding downstream 137593 37505729 ~ 37505802 (+)
LOC110508012 LOC106581399 coding downstream 168393 37536529 ~ 37568873 (+)
LOC110508017 NA coding downstream 684497 38052633 ~ 38060113 (+)
LOC110507217 NA coding downstream 1101782 38469918 ~ 38474599 (+)
G2079465 NA non-coding upstream 832 37365664 ~ 37365907 (+)
G2079462 NA non-coding upstream 2355 37363277 ~ 37364384 (+)
G2079459 NA non-coding upstream 4881 37361581 ~ 37361858 (+)
G2079458 NA non-coding upstream 5439 37360939 ~ 37361300 (+)
G2079457 NA non-coding upstream 5919 37360554 ~ 37360820 (+)
G2079469 NA non-coding downstream 723 37368859 ~ 37369736 (+)
G2079563 NA non-coding downstream 176409 37544545 ~ 37546090 (+)
G2079600 NA non-coding downstream 259685 37627821 ~ 37631175 (+)
G2079606 NA non-coding downstream 270750 37638886 ~ 37639112 (+)
G2079607 NA non-coding downstream 285663 37653799 ~ 37654022 (+)
G2079197 NA other upstream 85907 37279105 ~ 37280832 (+)
LOC110508005 LOC106613226 other upstream 927385 36438225 ~ 36440709 (+)
G2078493 NA other upstream 1064697 36263506 ~ 36302664 (+)
G2078425 NA other upstream 1262638 36102874 ~ 36104101 (+)
G2079657 NA other downstream 447742 37815848 ~ 37819286 (+)
G2080014 NA other downstream 576796 37944932 ~ 37945151 (+)
G2081884 LOC106581433 other downstream 2459522 39827658 ~ 39837383 (+)
LOC110507223 LOC106613251 other downstream 2527531 39781189 ~ 39938079 (+)
G2081949 NA other downstream 2563738 39931874 ~ 39933835 (+)

Expression


Co-expression Network