mre11a (mre11a)


Basic Information

Item Value
gene id mre11a
gene name mre11a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37318716 ~ 37357606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965198.1
CCGCTTCATGGAGTTTATTGTCGTCTTTTGGGATTTGCTGTTTTTCTTCGTCAGACATAGTATGGCTACATGCGGAGGCTTCATGTAAAGAAAACTACATTTGCCTCTCGGAAACGACGTTTCCTGTGCTAACTTCCGTAAGGGGAGTTGTTCACATGTACACAATAATCGAGCGCGGGGAGTAGGAGAGgtgacATCTCCGGAGACTTGTTAACTGTATTGATACAGGTGTTGACATCACTCCCTCTCACTACCTCTGCTGCTGAAGGGTTCTCTGCTCTGGACCTGTTTCCATTCAACATGACATCAGAGAACACCCTGGACGACGAGGACACCTTCAAGATCCTGATCGCCACGGATATTCACCTTGGTTACCTGGAGAAAGATGCTGTCCGTGGCAACGACACGTTCAACACCTTCGACGAGATCCTGAAGTGTGCCAAACAgaaccaaGTTGACTTCATCCTGTTGGGAGGTGATCTGTTCCATGAGAACAAGCCTTCCAGACGCTGTCTTCACTCCTGCATCTCTCTGCTGAGGAAGTACTGCATGGGAGACACTCCTATCCTCTTCGATGTCCTCAGTGACCAGGCTGTCAACTTCAGCAACAGCAAGTTTCCTTGGGTGAACTACCAGGATGAGAACCTGAACATCTCCATCCCCGTGTTCAGTGTGCACGGTAACCATGACGATCCTACAGGGGCGGATGGTCTGTGTGCGTTGGATCTCCTGAGCTCTGCCGGACTTGTCAATCATTTTGGCCGCAGCCAATcagtagagaggatagagattAGTCCCGTCCTCCTGCAGAAAGGCAGCACTAAGCTAGCCCTGTACGGCATCGGCTCTATTCCTGATGAGCGCCTCTACAGGATGTTTGTTAACAACCAGGTGACCATGCTCCGCCCCAAAGAAGACCAGGACCAATGGTTCAACCTCTTCACCATCcaccagaacaggagtAAGCATGGGGCCACCAACTACATCCCAGAGCAGTTTCTGGATGACTTTCTGGACCTGGTGGTGTGGGGTCATGAACATGAGTGTCTGATAAACCCCAGAAGGAACGAACAGCGGCTGTTCTATGTCACCCAGCCTGGTAGCTCTGTTGCCACATCACTGTCCCCCGGAGAGGCCGTCAAGAAgcacaTAGGTCTGCTGAGGGTGAAGGGGCGTAAGATGAACCTTCAGAAGATCCCGCTGCACACGGTGCGTCAGTTCTTCATCCAGGACCTGGTCCTCTCAGAGCACCCTGACCTCTTCAACCCTGACATGCCCAAGGTCAACCAGAGGGTAGAGGCCTTCTGCCAGGAGAAGGTGGAAGCGATGATTGAGGAAGCAGAGCGAGATCGACTAGGAAACCCCCTTACCCCTGAGAAACCCCTCATACGCctgagagtggACTACAGTGGTGGTTTTGAGGCCTTCAATGCCACTCGTTTCAGTCAGAAGTTTGTAGAGCAGGTTGCAAACCCCAAAGACGTTGTTCACTTCATCAGACAGAAGGAGTACAAGGCCAAAGttaaagGCGAAGAGGGTGTTGACTTTGGGCAGCTCCTGAGTCACTCCTCAACTGAGGGTCTGAGGGTGGAGGATCTCATTAAAGAGTACTTCCTGACAGCAgaaaagacGGTGCAGCTCTCCCTGCTGACGGAGCAGGGCATGGGGAAGGCAGTGCAGGAGTATGTGGACAAGGAGGAGAAGGATGCCATCGAGGAACTGATCAGATACCAGCTGGAGAAAACCCAGagacacctgcagcagagaggagtactgacagaggaggagattgaccaggagATTCGCCGTTTCAGAGAATCTAAGAAAAACACtgcagaggaggatgaagaggttCAGGTGGCCCTCAACAGAGCTAAAGCTCACCGCATAGAGCGAGGCGAAGACCTGGACCTATCAGATGAGCCTGATGTTTCCATGGATTCGGACGAGGACTCTGCCCCGCCTCCCCCCACCAGGGGCAGGGggcggggggggagggggaggggccaAACCACAGCCAGGAGAGGAAGAGGTGCAGCAGAGCCAAAGCCAGCAGGGCGGGCCCGTTCTCAGAAGGCCTCAGTGGTCAACCCCACCCAGGGCAGAAACATCATGGATGCGTTCCAGGCTGCACCTCAGCGGCCATCGAGAGGGGCGGTGTCGGCTAAATCTTACACAGATGAGATAACCATTGATGATGATGACTCTGACGATGTTTCCTTTGTGAAGCCTGCATCAAGACCAACACCTGCATCACGACCAACACAGAGgacctcctcctcttcctcctccagtaGGCGGGGCTCCCAGAGTCAGAGCCAATCATACAGAGGAGTGACATTTGATGACGACGATGATGAGgaggaCTTTGACCCGTTTAAAGGCTCCAGTAAGAGTGGCCGGCGATAGCTTTAACCCCGCCCCTTTGGACAATGTTCATGTTTCTTATTGGCTAGTGAGCTGTGAATGTATGATTAACTTACCCATAGTTCTTCACACCACTTATGGTCCTGACGATGGACCCCTGGGCTGCCAATACACTGCCTGTTCAGAATAGAGGAAGCATTAGCTGGCTGAACCTGTGTCTAAACTcttatttttcatcctatagcttgttctcaaTCTTTTTAATTGTGAGATGTTGTACGGTGAGGTCCCAGCCCTATTAGGTTTCCATTCATTCTAACTTCTAGCTGGACTTTTCCATACCATCTGAAGACCTGCTTTGACTGTTGATTGGCCGTTCTGAGTTCCTAAAGCGTCATTAGTCAGTTTTGTTGAGCCCTGTTATTGGTCAGTGTTGGACCCATTTAGTCACCATGGCGACCGTCTGCTTTCAGCAAATTTATTAAATACTTCCTGTTTCTATTT

Function

symbol description
mre11a Predicted to enable single-stranded DNA endodeoxyribonuclease activity. Predicted to be involved in mitotic DNA damage checkpoint signaling and nucleic acid metabolic process. Predicted to act upstream of or within double-strand break repair and meiotic cell cycle. Predicted to be located in nucleus. Predicted to be part of Mre11 complex. Predicted to be active in site of double-strand break. Is expressed in alar plate midbrain region; digestive system; eye; immature eye; and midbrain. Human ortholog(s) of this gene implicated in breast carcinoma; endometrial cancer; stomach carcinoma; and urinary bladder cancer. Orthologous to human MRE11 (MRE11 homolog, double strand break repair nuclease).

NR:

description
double-strand break repair protein MRE11

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0005634 nucleus cellular_component
GO:0030145 manganese ion binding molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004527 exonuclease activity molecular_function

KEGG:

id description
K10865 MRE11; double-strand break repair protein MRE11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965198.1 True 2871 mRNA 0.51 19 37318716 37357606

Neighbor

gene id symbol gene type direction distance location
LOC110536894 NA coding upstream 43634 37031161 ~ 37276857 (+)
LOC110507948 LOC106581405 coding upstream 454749 36707926 ~ 36863967 (+)
LOC118936607 LOC106581404 coding upstream 615193 36678773 ~ 36703523 (+)
LOC118944683 NA coding upstream 699990 36610735 ~ 36618726 (+)
LOC110507218 LOC106591049 coding upstream 772219 36453761 ~ 36546497 (+)
trnat-agu-151 NA coding downstream 147955 37505561 ~ 37505634 (+)
trnat-agu-152 NA coding downstream 148123 37505729 ~ 37505802 (+)
LOC110508012 LOC106581399 coding downstream 178923 37536529 ~ 37568873 (+)
LOC110508017 NA coding downstream 695027 38052633 ~ 38060113 (+)
LOC110507217 NA coding downstream 1112312 38469918 ~ 38474599 (+)
G2079207 NA non-coding upstream 10784 37307295 ~ 37307932 (+)
G2079194 NA non-coding upstream 39750 37277709 ~ 37278966 (+)
G2079188 NA non-coding upstream 59592 37257044 ~ 37259124 (+)
G2079170 NA non-coding upstream 62403 37252761 ~ 37256313 (+)
G2079164 NA non-coding upstream 122745 37195748 ~ 37195971 (+)
G2079457 NA non-coding downstream 2948 37360554 ~ 37360820 (+)
G2079458 NA non-coding downstream 3333 37360939 ~ 37361300 (+)
G2079459 NA non-coding downstream 3975 37361581 ~ 37361858 (+)
G2079462 NA non-coding downstream 5671 37363277 ~ 37364384 (+)
G2079465 NA non-coding downstream 8058 37365664 ~ 37365907 (+)
G2079197 NA other upstream 37884 37279105 ~ 37280832 (+)
LOC110508005 LOC106613226 other upstream 879362 36438225 ~ 36440709 (+)
G2078493 NA other upstream 1016674 36263506 ~ 36302664 (+)
G2078425 NA other upstream 1214615 36102874 ~ 36104101 (+)
G2079468 LOC106581367 other downstream 9133 37366739 ~ 37368136 (+)
G2079657 NA other downstream 458272 37815848 ~ 37819286 (+)
G2080014 NA other downstream 587326 37944932 ~ 37945151 (+)
G2081884 LOC106581433 other downstream 2470052 39827658 ~ 39837383 (+)
LOC110507223 LOC106613251 other downstream 2538061 39781189 ~ 39938079 (+)

Expression


Co-expression Network