G2079194


Basic Information

Item Value
gene id G2079194
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37277709 ~ 37278966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2377330
GGAGATATCTTTATTCAAATATAGACGGTCTGAGTTTCCGGAAGCTGAAAAACTAAACACCACAAGGAAAGTTCCGTTATTCATATCAAGGAAAGTGTCAACACTAGAAAATAAATGGTTTATTTCAGACCATTTGATAGACAAGTTACACAAGCCGTAATTGTAGAAATCGAACTAATTTAAAATGTTGGTCCAAGTAAACAACAGCaatcctcaacacacacacacacacacaccatcttaaGGCTTCCCAACCCACAACAGGGAATCATTTCAGAGCAGAGTGGTTACACTATTTAATACACAAAACTACACACAAAATTCAGTCTATTGCAGTTTGCAGCAACAGTGGGACACACAGTATCAGATGTATACAACATGGCCTTGGTAGGCCTCATTCCTCTTCCCTACACCCCAATGTCCCTGGAGGTCATTCATCAGCATCCTCCTCTTCCAAATGGCCTTGGTAGGCCTCATTCCTCTTCCCTACACCCCAATGTCCCTGGAGGTCATTCATCAGCATCCTCCTCTTCCAAATGGCCTTGGTAGGCCTCATTCCTCTTCCCTACACCCCAATGTCCCTGGAGGTCATTcatcaacatcctcctcttccaaaTGGCCTTGGTAGGCCTCATTCCTCTTCCCTACATGACGACACCCACGGGACGTCCATCAGAGAAGTTCAGGTTGATAAAGTCTGATCTTCAGCATCATGGTCCAGGTCCTGTTGCAGTCTGGTAAGTGAGGTTGGTCCTGTTGTGGTCAATAGCTCCATTGTAGttggtcctgttgtggtcagTAGCTCCATTGTGGttggtcctgttgtggtcagTAGCTCCATTGTGGTTGGTTGGGGTGTAGCGAGGTCTGCAGGGACCTCATGTCCCTGAGCAGTGTTAGACTTTTCCTGCTACGGTCCCCCGGTCGAACCTTGACCGCCCCGGCAGAGCGACCGCGCGTGGTCACTGTGGTGGTCACCTTCACCTCTCCACTTTGCTTCTGACGAGCATCTCTCCTAAAC
>TU2377331
GGAGATATCTTTATTCAAATATAGACGGTCTGAGTTTCCGGAAGCTGAAAAACTAAACACCACAAGGAAAGTTCCGTTATTCATATCAAGGAAAGTGTCAACACTAGAAAATAAATGGTTTATTTCAGACCATTTGATAGACAAGTTACACAAGCCGTAATTGTAGAAATCGAACTAATTTAAAATGTTGGTCCAAGTAAACAACAGCaatcctcaacacacacacacacacacaccatcttaaGGCTTCCCAACCCACAACAGGGAATCATTTCAGAGCAGAGTGGTTACACTATTTAATACACAAAACTACACACAAAATTCAGTCTATTGCAGTTTGCAGCAACAGTGGGACACACAGTATCAGATGTATACAACATGGCCTTGGTAGGCCTCATTCCTCTTCCCTACACCCCAATGTCCCTGGAGGTCATTCATCAGCATCCTCCTCTTCCAAATGGCCTTGGTAGGCCTCATTCCTCTTCCCTACACCCCAATGTCCCTGGAGGTCATTcatcaacatcctcctcttccaaaTGGCCTTGGTAGGCCTCATTCCTCTTCCCTACACCCCAATGTCCCTGGAGGTCATTcatcaacatcctcctcttccaaaTGGCCTTGGTAGGCCTCATTCCTCTTCCCTACATGACGACACCCACGGGACGTCCATCAGAGAAGTTCAGGTTGATAAAGTCTGATCTTCAGCATCATGGTCCAGGTCCTGTTGCAGTCTGGTAAGTGAGGTTGGTCCTGTTGTGGTCAATAGCTCCATTGTAGttggtcctgttgtggtcagTAGCTCCATTGTGGttggtcctgttgtggtcagTAGCTCCATTGTGGTTGGTTGGGGTGTAGCGAGGTCTGCAGGGACCTCATGTCCCTGAGCAGTGTTAGACTTTTCCTGCTACGGTCCCCCGGTCGAACCTTGACCGCCCCGGCAGAGCGACCGCGCGTGGTCACTGTGGTGGTCACCTTCACCTCTCCACTTTGCTTCTGACGAGCATCTCTCCTAAAC

Function

NR:

description
centrosomal protein of 57 kDa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2377330 False 1021 lncRNA 0.48 3 37277709 37278966
TU2377331 True 1021 lncRNA 0.48 3 37277709 37278966

Neighbor

gene id symbol gene type direction distance location
LOC110536894 NA coding upstream 2627 37031161 ~ 37276857 (+)
LOC110507948 LOC106581405 coding upstream 413742 36707926 ~ 36863967 (+)
LOC118936607 LOC106581404 coding upstream 574186 36678773 ~ 36703523 (+)
LOC118944683 NA coding upstream 658983 36610735 ~ 36618726 (+)
LOC110507218 LOC106591049 coding upstream 731212 36453761 ~ 36546497 (+)
mre11a mre11a coding downstream 39750 37318716 ~ 37357606 (+)
trnat-agu-151 NA coding downstream 226595 37505561 ~ 37505634 (+)
trnat-agu-152 NA coding downstream 226763 37505729 ~ 37505802 (+)
LOC110508012 LOC106581399 coding downstream 257563 37536529 ~ 37568873 (+)
LOC110508017 NA coding downstream 773667 38052633 ~ 38060113 (+)
G2079188 NA non-coding upstream 18585 37257044 ~ 37259124 (+)
G2079170 NA non-coding upstream 21396 37252761 ~ 37256313 (+)
G2079164 NA non-coding upstream 81738 37195748 ~ 37195971 (+)
G2079162 NA non-coding upstream 83062 37194388 ~ 37194647 (+)
G2079161 NA non-coding upstream 83589 37193831 ~ 37194120 (+)
G2079207 NA non-coding downstream 28329 37307295 ~ 37307932 (+)
G2079213 NA non-coding downstream 42603 37321569 ~ 37323327 (+)
G2079457 NA non-coding downstream 81588 37360554 ~ 37360820 (+)
G2079458 NA non-coding downstream 81973 37360939 ~ 37361300 (+)
G2079459 NA non-coding downstream 82615 37361581 ~ 37361858 (+)
LOC110508005 LOC106613226 other upstream 838355 36438225 ~ 36440709 (+)
G2078493 NA other upstream 975667 36263506 ~ 36302664 (+)
G2078425 NA other upstream 1173608 36102874 ~ 36104101 (+)
G2078382 NA other upstream 1243710 36033285 ~ 36033999 (+)
G2079197 NA other downstream 139 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 87773 37366739 ~ 37368136 (+)
G2079657 NA other downstream 536912 37815848 ~ 37819286 (+)
G2080014 NA other downstream 665966 37944932 ~ 37945151 (+)
G2081884 LOC106581433 other downstream 2548692 39827658 ~ 39837383 (+)

Expression


Co-expression Network