G2078493


Basic Information

Item Value
gene id G2078493
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36263506 ~ 36302664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2376429
acagacacagacacagacacagacacagacagacagacagacagacagacacacagacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacacacagacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacacacacacacacacacacacagaaagtacAGTGTGAGAATTTGGGCATTAAGAACATGTCAAAATATTCCCGCCAATGGTAAACCAACAACCAACTATCTCTTGTTAGACAGCCACTCACAGCAGGGCGTGCAGAACGCAGGCGAATGGTGTGACTCCGATCCCACCCGCCACACACAGACTGACCTCGTAGTTAAATACCTCCTGTGACGAACTGCCAAACGGACCATCCACGTACAGCctacacacagagaggaagggttACAATAGTGAGACAGTGACAAATTACACACTACTTGAGACAATTATGACAAGTGGCTTTCGTATGTTCACCTACATCCTTGTGGTGGTCTATACTCGCAGGACCTCATTTATAGTAAATGAATCGTAaactaggacacacacacactgtatacacacacactgtatacacacacacacaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac
>TU2376423
CCCCAGATATCAGCCCCTCTCTACTAGTCACTAGATGGCACTATAACCCCAGATATCAGCCTctccactacagacctgtagaTGGCGCTCTGCCCCTGCTCTGGGGGAGCACCAGCAGGTTTTTAAATagtacacacacagcacaccaaGAGAAGAAAGTTAAAAGACGGACCCAAGCCTCGGGCCTCAGCACAGGAGGTGCCATACAACCTCTCTACCCCTAGGCTCTACCGAGTCCCCAACAACCGGATGTTCcagttttcaggggaaatggaaagagagactTCCGCTTTTGGAcattaactcctcctccacatttactggattggttgaacagtgcagaagataACTTTTTCTTCTTGTCAAGACCAGTATGAGGGGGATCTAGTCTCAGGCgtttcttttacacctgctacaTTTGGTTACTCCACCCCTGATATCtaaccctgacctttaacccctagtCCCCAGGCTGACCTTGTGATGTAAGGCACACAGCAGCTCAGCGAACCAGTAGAAGGACTGCAGCTCCCTGCATACCCACACAAAGTATAGCCTCCTGAGACGGAAATGCCTCCAGCCATCcctgagacagaacacacacacacacacacacacacacacacacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacacacagacagacagacagacacacacagacagacagacagacagacacacagacacacacacagacagacagacagacagacagacagacagacacacagacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacagacagacagacagacagacagacagacagacagacagacagacagacagacaga
>TU2376424
CCCCAGATATCAGCCCCTCTCTACTAGTCACTAGATGGCACTATAACCCCAGATATCAGCCTctccactacagacctgtagaTGGCGCTCTGCCCCTGCTCTGGGGGAGCACCAGCAGGTTTTTAAATagtacacacacagcacaccaaGAGAAGAAAGTTAAAAGACGGACCCAAGCCTCGGGCCTCAGCACAGGAGGTGCCATACAACCTCTCTACCCCTAGGCTCTACCGAGTCCCCAACAACCGGATGTTCcagttttcaggggaaatggaaagagagactTCCGCTTTTGGAcattaactcctcctccacatttactggattggttgaacagtgcagaagataACTTTTTCTTCTTGTCAAGACCAGTATGAGGGGGATCTAGTCTCAGGCgtttcttttacacctgctacaTTTGGTTACTCCACCCCTGATATCtaaccctgacctttaacccctagtCCCCAGGCTGACCTTGTGATGTAAGGCACACAGCAGCTCAGCGAACCAGTAGAAGGACTGCAGCTCCCTGCATACCCACACAAAGTATAGCCTCCTGAGACGGAAATGCCTCCAGCCATCcctgagacagaacacacacacacacacacacacacacacacacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacacacagacagacagacagacacacacagacagacagacagacagacagacagacagacagacagacagacagacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacagacagacagacagacagacagacagacagacagacagacagacagacagacaga
>TU2376426
CCCCAGATATCAGCCCCTCTCTACTAGTCACTAGATGGCACTATAACCCCAGATATCAGCCTctccactacagacctgtagaTGGCGCTCTGCCCCTGCTCTGGGGGAGCACCAGCAGGTTTTTAAATagtacacacacagcacaccaaGAGAAGAAAGTTAAAAGACGGACCCAAGCCTCGGGCCTCAGCACAGGAGGTGCCATACAACCTCTCTACCCCTAGGCTCTACCGAGTCCCCAACAACCGGATGTTCcagttttcaggggaaatggaaagagagactTCCGCTTTTGGAcattaactcctcctccacatttactggattggttgaacagtgcagaagataACTTTTTCTTCTTGTCAAGACCAGTATGAGGGGGATCTAGTCTCAGGCgtttcttttacacctgctacaTTTGGTTACTCCACCCCTGATATCtaaccctgacctttaacccctagtCCCCAGGCTGACCTTGTGATGTAAGGCACACAGCAGCTCAGCGAACCAGTAGAAGGACTGCAGCTCCCTGCATACCCACACAAAGTATAGCCTCCTGAGACGGAAATGCCTCCAGCCATCcctgagacagaacacacacacacacacacacacacacacacacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacacacagacagacagacagacacacacagacagacagacagacagacacacagacagacagacagacagacagacagacagacagacagacagacacacagacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacagacagacagacagacagacagacagacagacagacagacagacagacagacaga
>TU2376427
CCCCAGATATCAGCCCCTCTCTACTAGTCACTAGATGGCACTATAACCCCAGATATCAGCCTctccactacagacctgtagaTGGCGCTCTGCCCCTGCTCTGGGGGAGCACCAGCAGGTTTTTAAATagtacacacacagcacaccaaGAGAAGAAAGTTAAAAGACGGACCCAAGCCTCGGGCCTCAGCACAGGAGGTGCCATACAACCTCTCTACCCCTAGGCTCTACCGAGTCCCCAACAACCGGATGTTCcagttttcaggggaaatggaaagagagactTCCGCTTTTGGAcattaactcctcctccacatttactggattggttgaacagtgcagaagataACTTTTTCTTCTTGTCAAGACCAGTATGAGGGGGATCTAGTCTCAGGCgtttcttttacacctgctacaTTTGGTTACTCCACCCCTGATATCtaaccctgacctttaacccctagtCCCCAGGCTGACCTTGTGATGTAAGGCACACAGCAGCTCAGCGAACCAGTAGAAGGACTGCAGCTCCCTGCATACCCACACAAAGTATAGCCTCCTGAGACGGAAATGCCTCCAGCCATCcctgagacagaacacacacacacacacacacacacacacacacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacacacagacagacagacagacacacagacagacacagacagacacagacagacagacagacagacagacagacagacagacagacagacagacacacagacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagacacagacagacagacagacagacagacagacagacagacagacagacagacagacaga

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2376429 False 853 lncRNA 0.48 2 36263506 36302664
TU2376423 False 1027 TUCP 0.50 2 36300938 36302042
TU2376424 False 943 TUCP 0.50 2 36300938 36302042
TU2376426 False 1027 TUCP 0.50 2 36300938 36302042
TU2376427 True 1025 TUCP 0.50 2 36300938 36302042

Neighbor

gene id symbol gene type direction distance location
LOC110507977 fzd4 coding upstream 251172 36005425 ~ 36012334 (+)
LOC110507976 LOC106581370 coding upstream 440622 35804534 ~ 35822884 (+)
LOC110507975 LOC106581363 coding upstream 744397 35465699 ~ 35519109 (+)
LOC110507973 LOC106581395 coding upstream 1099047 35156006 ~ 35164459 (+)
gucy1a2 LOC106581392 coding upstream 1152464 35014631 ~ 35111042 (+)
naalad2 LOC106581411 coding downstream 62991 36365655 ~ 36381011 (+)
LOC110508005 LOC106613226 coding downstream 135561 36438225 ~ 36440709 (+)
LOC110507218 LOC106591049 coding downstream 151097 36453761 ~ 36546497 (+)
LOC118944683 NA coding downstream 308071 36610735 ~ 36618726 (+)
LOC118936607 LOC106581404 coding downstream 376109 36678773 ~ 36703523 (+)
G2078461 NA non-coding upstream 83488 36179131 ~ 36180018 (+)
G2078456 LOC106581415 non-coding upstream 95010 36165327 ~ 36168496 (+)
G2078451 NA non-coding upstream 103657 36159552 ~ 36159849 (+)
G2078447 NA non-coding upstream 110378 36152817 ~ 36153128 (+)
G2078444 LOC106581415 non-coding upstream 111972 36142375 ~ 36151534 (+)
G2078515 NA non-coding downstream 1889 36304553 ~ 36305222 (+)
G2078529 NA non-coding downstream 48659 36351323 ~ 36351646 (+)
G2078530 NA non-coding downstream 50056 36352720 ~ 36353940 (+)
G2078544 NA non-coding downstream 88726 36391390 ~ 36392076 (+)
G2078548 LOC106581410 non-coding downstream 105340 36408004 ~ 36411380 (+)
G2078425 NA other upstream 159405 36102874 ~ 36104101 (+)
G2078382 NA other upstream 229507 36033285 ~ 36033999 (+)
G2078296 NA other upstream 330997 35932115 ~ 35932509 (+)
G2078253 NA other upstream 391773 35870485 ~ 35871733 (+)
G2078188 NA other upstream 465516 35797572 ~ 35797990 (+)
LOC110536894 NA other downstream 970822 37031161 ~ 37276857 (+)
G2079197 NA other downstream 976441 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 1064075 37366739 ~ 37368136 (+)
G2079657 NA other downstream 1513214 37815848 ~ 37819286 (+)
G2078509 NA non-coding upstream 4918 36295326 ~ 36296020 (+)

Expression


Co-expression Network