G2078456 (LOC106581415)


Basic Information

Item Value
gene id G2078456
gene name LOC106581415
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36165327 ~ 36168496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2376384
catcaacatcatcaccatcatcatctccaccatcatcatcatcagaatcatcaacatcatcatcatcaccatctccaccatcatcatcatcatcatcatcatcatcatctctaccatcatcatcatctccaccatcatcatcatcaacatcatcattatcatcaccatcatctcCACCATCATCATCGTCGTCATCTCAATAACAATATGAACAATCCCAACTATAATCAACGATAATAGTGACGGTAGATTGTTGTTAGTACAGCCAAGTCCAGTAGCACCAACCTGGTACCCTGGGCAGAGTGAGCGCTGCATGTTATGGAGCCCATAGGCCATGGAGTAGATGGCATTGATCACAAAGCCCATCTTAGTGTCCTGGGCATACTGCTGTCGCAATGACTCCCGCTCtgggagagaACTGCTGCAGGTGCGGTTGTACTTGAGGCTCTCCTGTGGGTGTCCCTTCAGCTTACAGTGGAAGCGATGTTGCCAGAACTCAGGAAACCAGGGGTTTCTCAGGTTGTTGTCCGGCCGCAGCTTCAGGTAGTACTCATCAAACCACTTCACATCAGCTGACTGCAGTTTGATGGTGATTCCCCCCGCCGCCTCGCGCACGTACCCATCTGTCACATCGTACCGGTCCGCCCAGCCATCACTGGGACAGTGGGACAGAAGGGACATAGAAGTTAGGAACCATGAAT

Function

NR:

description
PREDICTED: metabotropic glutamate receptor 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2376384 True 701 lncRNA 0.49 2 36165327 36168496

Neighbor

gene id symbol gene type direction distance location
LOC110507977 fzd4 coding upstream 152993 36005425 ~ 36012334 (+)
LOC110507976 LOC106581370 coding upstream 342443 35804534 ~ 35822884 (+)
LOC110507975 LOC106581363 coding upstream 646218 35465699 ~ 35519109 (+)
LOC110507973 LOC106581395 coding upstream 1000868 35156006 ~ 35164459 (+)
gucy1a2 LOC106581392 coding upstream 1054285 35014631 ~ 35111042 (+)
naalad2 LOC106581411 coding downstream 197159 36365655 ~ 36381011 (+)
LOC110508005 LOC106613226 coding downstream 269729 36438225 ~ 36440709 (+)
LOC110507218 LOC106591049 coding downstream 285265 36453761 ~ 36546497 (+)
LOC118944683 NA coding downstream 442239 36610735 ~ 36618726 (+)
LOC118936607 LOC106581404 coding downstream 510277 36678773 ~ 36703523 (+)
G2078451 NA non-coding upstream 5478 36159552 ~ 36159849 (+)
G2078447 NA non-coding upstream 12199 36152817 ~ 36153128 (+)
G2078444 LOC106581415 non-coding upstream 13793 36142375 ~ 36151534 (+)
G2078424 LOC106581415 non-coding upstream 25505 36137663 ~ 36139822 (+)
G2078442 NA non-coding upstream 27840 36137187 ~ 36137487 (+)
G2078461 NA non-coding downstream 10635 36179131 ~ 36180018 (+)
G2078493 NA non-coding downstream 95010 36263506 ~ 36302664 (+)
G2078509 NA non-coding downstream 126830 36295326 ~ 36296020 (+)
G2078515 NA non-coding downstream 136057 36304553 ~ 36305222 (+)
G2078529 NA non-coding downstream 182827 36351323 ~ 36351646 (+)
G2078425 NA other upstream 61226 36102874 ~ 36104101 (+)
G2078382 NA other upstream 131328 36033285 ~ 36033999 (+)
G2078296 NA other upstream 232818 35932115 ~ 35932509 (+)
G2078253 NA other upstream 293594 35870485 ~ 35871733 (+)
G2078188 NA other upstream 367337 35797572 ~ 35797990 (+)
LOC110536894 NA other downstream 1104990 37031161 ~ 37276857 (+)
G2079197 NA other downstream 1110609 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 1198243 37366739 ~ 37368136 (+)

Expression


Co-expression Network