LOC110507976 (LOC106581370)


Basic Information

Item Value
gene id LOC110507976
gene name LOC106581370
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35804534 ~ 35822884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588404.2
ACAAACACTGCTGTAGTAGTAAAGGTTATTAAACTACCAAAGCGAAACGACTTCCCCTGACCACACCCTCCATCATGCTTTGGAATGAAGAACTGCATAAGTGTGCTGAGAACACTTCACACAACAACCTCTCCGACTTCACACTCAATTACAGCTGTTAAGAAAGGCAAAGCATGGACGTGGTCTATGGGATGTATGTGCAATGGCTACTTCGGTGTGTCCTCTTCCTGATATCGCTGCCGTTTCTTCAAAGTAAAGatgtCACCATGGTGATAGGAGAGGTGGGCGGGGCTGTGACTATCCCCTGTACCTCAGACCTCTTTGAGAACCATCTGGTCTTCATGTACGTTCAGAGACCTGGTTCCAATGGAAATAATCCCCGGTTTATTAATGGCTACCATACGAAGAAGCGCTTAGACCCTAAGGAGTACACTAACCGTACACATGTAGACCCCAGACAGCGAACAATGAAGCTGTGGAGTATATTGCCGTCAGATGAGGGGTTGTACGAGTGCCACATTCAATACCAAACCAAGAAGAAGCAGGAGAACATACAGCTCAATGTGACAGCCAACTACAGCATCCCCATTGTAACGGTGGCCTGTGACAACGTCAGTTGCTTGGTGACGTGTTCCTCCGACAGTGGTTACCCTCGTAGGGACATTGAGTGGAGCCCAAACCCTCCTCTGAACCAGAGCCACTGGAGAGTAGTGAACAGTAGTGATGTGACAGACCCAGTCTCTATGCTGTTCTCTGTCTACAGTTCCATATCCGTCAACTGCTCCTCCGGACCCCGGCTGAACCTCAGCTGTAATGTAGGGGGCGCCCTTTCACAGGAACACACTGTCTGCTGGCCTCAGACAGGCTCTCCTGATGTTTATGTGACCTCTGCCGTTGTGGCTGGTGCTGTTGCTCTGCTGTGTTTCCTGCTGGCTGGGCTGTTTGTCTTCAAGGAAAGGAAGGCTCAGACAGCCAGAGTTGATCAAGATGGGGAGGAAGCAGCTAGGCCAGCTGAAAGAGTACAGCTCACCTGTAGGAACCTAGATTCTTAATGGAACTTGGAGTCTGTAACATTGTACACTTGGAACCAAGAATATGGAAGGTTATTTTATTGATAAGATATAAATAAATCTGAAGTGCTATCTTCTGATGGGACCAGGGGATGGTCACTGAGGTGACCTACATATTGCCTGGACTTGGCGTCATTGAAAATGAGGTTAACTTTCCTCTCCACACTGGAGGACAGGCTGGACATGAGAGGTGTTTTCATGATTTTGAGGAAGACTGGGAGTTGTATAAATATTTAACCAGTATGTTCAAATGACTGAGTTCCAATGAAGAACTAGACATGCAATGACTGTCCTCAATGTGTGCACTATTGTAAGACATGGAGTTAACCAGGGAAATGTGTTAAAGTCAATATACATGTGGATTAGGACTAATAACCTGCACTGCACTTAAACAGAGTGTACACGTATTTAATGTGCACTTATCAGGGGTTGACTGTATTCAACTGACTCATGTGCAATTGAAAACTGTGTAACTGTGAAGCTATCTGTGTATTAACCACAGTTTACGCAGTACAGACATGGCCACAACTTGGGGCTTGGTTCCTCTATAGGtttttcctaggttcctgccttctggggagtttttcatgATCTGCCTCTGTATTTTTGctaatgtacgaagggctttatgaaGTACATTTGAGATGATGAACGGGGGAAGTGAATGTGTCTGTCAGGAGAAGATCTTATATTCCAGTTTCTATACCTGCATCTACCAGTAAGACTGAGTCCACCCCACATATTCCTGCCTGTATGAACTGGTTTTAAGGAACTACATAACATGTGCTGGTTGTTCAGTGAGACAGCAAAAGGTGGATGATGAATAGAACAAATGTTTACTGATTATttcaggatttaaaaaaaaggtgAATCTTTGATATGTATGCTACATATTTATGACATATTAAGTTGTTCTCATGTAAAATACTCTTGAAGGCTACATAATATTTGTAACCTCTTTTTGATAAGTTATGAATAAGTTATTTGTGTTAAATTATGTCTTTCGACTTTATACTAGTGCATATTCTATTTTCTCTGCTTCGAATATAATTAAAGTGATAAAGCTGTTGACAAAATTTGTTGAAttgtataaatcatttcaatttTCTAAATCAGTTACATAACCTTTGGATTGCTCAAACTCaataacgtaatctgattactttcagatacatttggattactttccccttaagaggcattagaacacaggtgtcaaactcaggagggcagagtgtctgtgggtttttgctcctcccttgtacagtacttgattgatgaatcaAGGTCACTATTTAGTAAGGAACACCACATCTGGTTGTCTAGGTTTTTAttgaaagggggaaaaaaactaaaacCTGCTGACACGATGtgttacatctgctcctgccacaccctctactgctcatcctgtgtctcatTGACCTGCCTCCACTCCgccagtgctctctccctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgattgtgtGGGCAGGGTCAGGTGtcctggagtcagagcagatccccaccagctgcaacccattccataatcaagacctctacaaatactcagccctgccacttccacgctgtcagatcgtaatctctgctcagtcagtctatgTTTCTAGCTGTTTAGatcctgttgtgcctgttttccctTGCCTGATTCTGgtttcctctccgctacagttctgaCTGATCTGACTCTGGTTCCTGTCCCCAGTCCCACGTCACATCATCCTGCTtctctgtcctggattccccaaTCTActgctcccttggattccccatccggacctgcttaccctgttcCAACCCCTCTCAGCCTCCGCTCCTGGTTTCCTACAACCCGCCCGAGCTTCACCTGGCCTGCACGCTACCTTCCCCCTGTGTGTTAATAAATACCTTGAATACTTTA

Function

NR:

description
T-lymphocyte activation antigen CD80-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588404.2 True 3015 mRNA 0.44 8 35804534 35822884

Neighbor

gene id symbol gene type direction distance location
LOC110507975 LOC106581363 coding upstream 285425 35465699 ~ 35519109 (+)
LOC110507973 LOC106581395 coding upstream 640075 35156006 ~ 35164459 (+)
gucy1a2 LOC106581392 coding upstream 693492 35014631 ~ 35111042 (+)
cwf19l2 cwf19l2 coding upstream 794730 34970520 ~ 35009804 (+)
rtor1 rtor1 coding upstream 850400 34953147 ~ 34954134 (+)
LOC110507977 fzd4 coding downstream 182541 36005425 ~ 36012334 (+)
naalad2 LOC106581411 coding downstream 542771 36365655 ~ 36381011 (+)
LOC110508005 LOC106613226 coding downstream 615341 36438225 ~ 36440709 (+)
LOC110507218 LOC106591049 coding downstream 630877 36453761 ~ 36546497 (+)
LOC118944683 NA coding downstream 787851 36610735 ~ 36618726 (+)
G2078171 NA non-coding upstream 18338 35784458 ~ 35786196 (+)
G2078155 NA non-coding upstream 50051 35754247 ~ 35754483 (+)
G2078132 NA non-coding upstream 66005 35736266 ~ 35738529 (+)
G2078133 NA non-coding upstream 67339 35736698 ~ 35737195 (+)
G2078110 NA non-coding upstream 91589 35712557 ~ 35712945 (+)
G2078238 NA non-coding downstream 16829 35839713 ~ 35839914 (+)
G2078240 NA non-coding downstream 22255 35845139 ~ 35850835 (+)
G2078251 NA non-coding downstream 43992 35866876 ~ 35868803 (+)
G2078255 NA non-coding downstream 51536 35874420 ~ 35876639 (+)
G2078290 NA non-coding downstream 104214 35927098 ~ 35927438 (+)
G2078188 NA other upstream 6544 35797572 ~ 35797990 (+)
G2078087 NA other upstream 111701 35684135 ~ 35692833 (+)
G2077777 NA other upstream 291021 35470330 ~ 35513513 (+)
G2077547 NA other upstream 657865 35146144 ~ 35146669 (+)
G2078253 NA other downstream 47601 35870485 ~ 35871733 (+)
G2078296 NA other downstream 109231 35932115 ~ 35932509 (+)
G2078382 NA other downstream 210401 36033285 ~ 36033999 (+)
G2078425 NA other downstream 279990 36102874 ~ 36104101 (+)
G2078493 NA other downstream 478054 36263506 ~ 36302664 (+)

Expression


Co-expression Network