LOC110508005 (LOC106613226)


Basic Information

Item Value
gene id LOC110508005
gene name LOC106613226
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36438225 ~ 36440709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588445.2
AAGACACTTTTACAGCCCTCAATAACCGGGAGTCACACCATTGCATTTGATGTAAGAACCAGTTTGTTCTGCATGACTGGGTGACGCCAGGCGCCCTCATTACACACTAGCCTAATACTAGGTTGGTTCCAACCGGCTACGCACTGCTGAACAACCACCGTGCTGCATTGGTTTTTTATTCTACACTTGTCGTCAGTATGGCTCAACTGAAGTTATCACTTTGCGTGTTGGTGTCTATTTCTTTCGCCTCGGTTTTGACCACAGACAGCTCCATTCAGTTTGCGTCCGAAAGTCTCAGTTCCTCATCGTTTCGCTCGGTGTGTAAGCCCATCCCCAGCACACTTTCTCTGTGCCACGGCGTCGGTTACGGGGATATGCGGCTGCCCAACCTGCTGGGGCACGACTCATTGAAAGAAGCCCAGCAACAGTCGGCCGCCTGGCTGCCGTTGGTCTCCAAACTCTGCCACCGAGATACCAAGAAGTTCTTGTGCTCGCTATTCGCCCCGGTGTGCCTACCGGAGGGGCCCGTGCGCCCCTGCCGTGGGCTGTGCGAGGCTGTGAGGGACGGTTGTCTCCCTGTGATGAGCGCGTTCGGGTTCCCGTGGCCCGACATGTTTAACTGCACACAGTTCCCACGCGGGGTCCATCTCTGTATTCCCACCACGACCCAAGACACACAGCGTGCGCGGAAGGGAGAGGAAGCGGGTCACGAGGAGGCATCAGAGGGAACAGTGATCTGTGACTCATGCAGTCTGGCTGCTGAGGGGGAGACCGACATCCAGAACAACTTCTGCAAGAGTCCATATGCCTTTAAACTGCTTATCGGGAGTGTGTCTGTGGAGGGGGGTGACTGCAGGTTAGTCCCTCTGGGCCGGAGTCGCATCCTGAGGTGGGAGGGTGGAGGCACGGAGAGGGCTGAGGGCGTCCGGGGGGCAATGGCCTACAGTGCCCTTTGGCTGCAGGAAGGGGGTACCTGCACCTGTCCTGCCCTGGAGGAGGCAaatgggggagaggggaaggggtcCGTGGCAGGGGTGTGGTACCTGGGCCTTGCTGACATACAGGAGGGCAGGTTGGTCCTCTCTAGGCTTGTGAGATGGAGGAAGGGGGACAAAGAACTCAAGAAGTTCATCAGGAGACTGCTCAAACAAGCCTGCTGATGATGTCATCAAACAAGCATAAAGAGACTTTCCAATTTGGCCAATTGGATGCGTATGAGAGGACACCACAGCCCTGTTACATGTCAACCTCTTGGCCTATAGACCCTATCCCTTCAATATCCCTTTCATATCCCTTCAATATCCCTTCAATATCCCTTTCATATCCCTTCAATATCCCTTTCATATCCCTTCAATATCCCTTTCATATCCCTTCAATATCCCTTTCATATCCCTTCAATATCCCTTTCATATCCCTTCAATATCCCTTCAACATCCCTTTCATATCCCTTCAATATCCCTTCAATATCCCTTCAACATCCCTTTCATATCCCTTCAATATCCCTTTCATATCCCTTCAATATCCCTTCAATATCCCTTTCATATCCCTTTCATATCCCTTTCATATCCCTTCAACATCCCTTTCATATCCCTTCAACATCCCTTTCATATCCCTTTCATATCCCTTCAACATCCCTTTCATATCCCTTCAATATCCCTTTCATATTCATATCATCTAGCTCTGGAGAAGTCGTGCCTTCATCATAGGGCTCCAGAGTGACGCAGGGgtttaagacactgcatctcagtgcaagaggtgtcactacattccctggttcgaatccaggcagaatcacatccggccgtgattgggagtctcatagggtggcgcacaattggtccagtgtcGTTCGGGTTTGgtcgtcattataaataagaatttgttctgaactgactttcctagataaataaaggttaaataaataagaataattGAGTATCTACCCAGTCTGTTCAGATCTACGAAGACCTGCTAGGCAGAAGAGAGACCATCAGAGGACCAGTGTGTTTGTTTGGATCTATGTTCTGGGCACCTGTCACATATTCATTATTAAGTGTATTAAATtctgaatattattatttttttaatcaaatgtgAGAACATGATTGTGATTTGTGTGAGCCGAGTGAGGACACAGTTACCAGTGAGGCACAGAGCAGCATTAGTTCCATTCAAAGCAGAGTATTATTGGCAGATAGTATCAGAGACTGCTGTGTAAGTGTCcaataaacattattttgagcTGTAAA
>TU2376553
ACAACCACCGTGCTGCATTGGTTTTTTATTCTACACTTGTCGTCAGTATGGCTCAACTGAAGTTATCACTTTGCGTGTTGGTGTCTATTTCTTTCGCCTCGGTTTTGACCACAGACAGCTCCATTCAGTTTGCGTCCGAAAGTCTCAGTTCCTCATCGTTTCGCTCGGTGTGTAAGCCCATCCCCAGCACACTTTCTCTGTGCCACGGCGTCGGTTACGGGGATATGCGGCTGCCCAACCTGCTGGGGCACGACTCATTGAAAGAAGCCCAGCAACAGTCGGCCGCCTGGCTGCCGTTGGTCTCCAAACTCTGCCACCGAGATACCAAGAAGTTCTTGTGCTCGCTATTCGCCCCGGTGTGCCTACCGGAGGGGCCCGTGCGCCCCTGCCGTGGGCTGTGCGAGGCTGTGAGGGACGGTTGTCTCCCTGTGATGAGCGCGTTCGGGTTCCCGTGGCCCGACATGTTTAACTGCACACAGTTCCCACGCGGGGTCCATCTCTGTATTCCCACCACGACCCAAGACACACAGCGTGCGCGGAAGGGAGAGGAAGCGGGTCACGAGGAGGCATCAGAGGGAACAGTGATCTGTGACTCATGCAGTCTGGCTGCTGAGGGGGAGACCGACATCCAGAACAACTTCTGCAAGAGTCCATATGCCTTTAAACTGCTTATCGGGAGTGTGTCTGTGGAGGGGGGTGACTGCAGGTTAGTCCCTCTGGGCCGGAGTCGCATCCTGAGGTGGG

Function

NR:

description
secreted frizzled-related protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588445.2 False 2249 mRNA 0.49 3 36438225 36440709
TU2376553 True 744 TUCP 0.57 3 36438375 36439354

Neighbor

gene id symbol gene type direction distance location
naalad2 LOC106581411 coding upstream 57214 36365655 ~ 36381011 (+)
LOC110507977 fzd4 coding upstream 425891 36005425 ~ 36012334 (+)
LOC110507976 LOC106581370 coding upstream 615341 35804534 ~ 35822884 (+)
LOC110507975 LOC106581363 coding upstream 919116 35465699 ~ 35519109 (+)
LOC110507973 LOC106581395 coding upstream 1273766 35156006 ~ 35164459 (+)
LOC110507218 LOC106591049 coding downstream 13052 36453761 ~ 36546497 (+)
LOC118944683 NA coding downstream 170026 36610735 ~ 36618726 (+)
LOC118936607 LOC106581404 coding downstream 238064 36678773 ~ 36703523 (+)
LOC110507948 LOC106581405 coding downstream 267217 36707926 ~ 36863967 (+)
LOC110536894 NA coding downstream 590452 37031161 ~ 37276857 (+)
G2078562 NA non-coding upstream 304 36436186 ~ 36437921 (+)
G2078548 LOC106581410 non-coding upstream 26845 36408004 ~ 36411380 (+)
G2078544 NA non-coding upstream 46149 36391390 ~ 36392076 (+)
G2078530 NA non-coding upstream 84285 36352720 ~ 36353940 (+)
G2078529 NA non-coding upstream 86579 36351323 ~ 36351646 (+)
G2078571 NA non-coding downstream 12105 36452814 ~ 36453166 (+)
G2078572 NA non-coding downstream 12600 36453309 ~ 36453542 (+)
G2078616 NA non-coding downstream 91960 36532669 ~ 36536033 (+)
G2078617 NA non-coding downstream 98621 36539330 ~ 36539929 (+)
G2078493 NA other upstream 136183 36263506 ~ 36302664 (+)
G2078425 NA other upstream 334124 36102874 ~ 36104101 (+)
G2078382 NA other upstream 404226 36033285 ~ 36033999 (+)
G2078296 NA other upstream 505716 35932115 ~ 35932509 (+)
G2078253 NA other upstream 566492 35870485 ~ 35871733 (+)
G2079197 NA other downstream 838396 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 926030 37366739 ~ 37368136 (+)
G2079657 NA other downstream 1375169 37815848 ~ 37819286 (+)
G2080014 NA other downstream 1504223 37944932 ~ 37945151 (+)

Expression


Co-expression Network