G2078548 (LOC106581410)


Basic Information

Item Value
gene id G2078548
gene name LOC106581410
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36408004 ~ 36411380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2376531
atgtggttaacaAATTTAATCCAAATGATAAACCTAAAAAGTAACTTCAATTGCCATTGCCAACGATGTAAAAATAGCCtgcataaagccaacaaataaaaacattgcaacctgcaggtagaaaatatcctgatttaaaatgttaaaaatcctataaatcacatttgctacacatggcctgtctgcaaaaAACTTTAAACATTGATACAATTAATGGGTCTGGCCCAAAGCTTGCACTAGCGAGCTGTAGGCTATTTACTCAAGGGATAagaagcagtgcttgacttgggcaggagcttacctcaaatgttctactacttgagctcctgttcctcttaatAAATAtcagctcaaaagtattgtggagctcctgcacctaaatataaacagtaccgacACCCAAAATGACTACgggaacctatttcagtccaagtcaagcactgatgaGAAGCCTCTTTTATGACATTCCCACTGGATCAGAACATTTTCCCTGTCACggtgagtggttatcgaaagggcgagagctggaaagatttttcaaatacattgacaattacaatagttcctcaatgtatgTAAATACAGAAtttgtttgaggtgaagaaaacttcactttgagaagctccacaggtcattagtggtggtgcattaagccaatcagaaatactatcagatccccaaatgagTACATTTATATGCCTACATTTGCACGCAGGCCACGTAGTCTATAGGCCTACTACTATGTGTAAATCAGGCCACggagcctataggcctacttatgtgtaaatcagGCcacatagcctataggcctacttctgtgtgtaaatcaggccacatagcctataggcctacttctacgCGTGcccgtccttactcaacattgacaggagcgctccaaaTGAAAAGACAATAACAAAATTAAATTGACAAAACTCATAAATGGACTGAGATAAACCCCCCAAAAATTCTcactagtgtagcataggttgtgcactctgcaaacaatgtgtccactcAGACAATGAGAACAGGACTAGCGGAATAATACTCAATGGATTAAAATAAACTATCATAACCAAAGTAACAAACATTGTGGATTAGAAATCATATGAATTAACGGTAAACATACTACTGGTGATATGGGGAAGTGATATACACTAACAACtcacacaatgaagttatgaaacaaATGTGCACCAATAGGCGGGAGAGaagtgcattctggagagagaagtgCATTCTGGATGGAGAAGTGCATTGTGCATCTGGGTGCATGGTCAATCTGACgtctgcattggccatgcagcatttacggtgatacGGCCTCAGCAGAAGTCGGGGCAAGAACGGCCTCAGCAGAAGTCGGGGCAAGAACGGCCTCAGCAGAAGTCGGGGCAAGAACGGCCTCAGCAGAAGTCGGGGCAAGAACGGCCTCAGCAGAAGTCGGGGCAAGAACGGCCTCAGCAGAAGTCAGGGCAAGAACGGCCTTAGCAGAAGTCAGGGCAAGAACGGCCTCAGCAGAAGTCAGGGCAAGAACGGCCTCAGCAGAAGTCAGGGCAAGAACGGCCTCAGCAGAAGTCAGGGCAAGAACGGCCTCAGCAGAAGTCAGGGCAAGAACGACCTAAgtagaagtcagggcattcatactccTTACGGAGCAGtacagagctgttgtcaagggagtgtgtttatacaggatgtaccacCCTCACCTACCGTGAACCAATCATGTCATCGTGGAGCTCTACAGAGCCCTCCACATTGGTACAACATTTGGGAGGGACATAGTGAAGTGGTATAGAGCTCCATTTGGCCTCTGGAGGCTCCACCACAATTTCaaatcaagcataaattggcttttgGTCTAGGCCTCagcaatggattagttcactgagataggtgaaaatatatatgttttactgctcaactaaaacaatctcagtcgaccaacagcctaagGACCAAACAATGGACCAGTGGACTGATTGGAGTCAGCCCTACTAAGGGTAATCTAAACACATAACTGGTGCAGATGAATAAACATCGATCAATTCATCATTATCGTGATAATTCAGCCAGTTATTGTGATATGGATAATGTTTTTTCATATCTCCCAGCTCTACTGTACACCTTTCACCCCAATACCcaaactacaAAACACACAGTCATGTCATTTAAACACACATAAATGTGTAAACATATAAACACTCCCTTTCCATCAAGTTTGTTAATTAAAGGAATAATGAAAATGTTAACTAAATACCTGATTGTTCTTGTACTACAACTAGAAGTATAGCTGGCTAGTGTCAGTGATGGAGAAGCAATACATAACAGATTCTGCAACTAGGGTCACTACTGTCTGCATCCGTCCTCCAGTGAGTCATCTTGTTGAGTAGAGGATGAACAGGCTGTATGGTCACAAGTCTAACAAGCACCGTGGTCGTTATCTTCGACTGCTAGTTGATGGGTTATATATTAGTCCTTATAACAGTCACGGAGTTCGTTCAGACACAATGATTAACTCTTTCTGGTAAGACACATCTGTGATTTATgccttctctttctctcggtctgTCTGCTAGTTGGATGAGACACACTGAATGTTCATTGTTTTGGTTTCAGCGGGGCACAGAGACGACACCAATACTTTAGTCGCATTACCTTTCATTTTACAAAACAGAGTTCAGTGCATCAGAGACAAATGATCAAACGTGTTTGCTAACAGCAGGAGACTGTTCAGTCCTCAGACGTTTCCAGCTCCCGGAGGCATTCGCTAAGGTTGGCCTGTCTCTCTGGCCCTGCACTGTCCTTCCTCTTGGTCAGCAGCCTGACCACTTCCTCCAGACCTTTCAGTGGAGGGGCATTATGGGGGAACAGCATCCCTCGGAGCAGACCGTCATTGAGCGTCATGGACAAACCGCACAGGAAGCGCAGGAACAGGTCGTACTGGCCGACAGGAGCGCTGAGGTAACGGTCAACGGCTTTGCGGTACATGTCCACCAGAGAGTGTTCCTTGAACAGCTTGGAGACGCGGTGGGACTGGTCTAGAACGTTCCGCTCCTCCAGACGGAAGGTGAGCCAAACATAATGTGCAGCCATGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2376531 True 3101 lncRNA 0.44 4 36408004 36411380

Neighbor

gene id symbol gene type direction distance location
naalad2 LOC106581411 coding upstream 26993 36365655 ~ 36381011 (+)
LOC110507977 fzd4 coding upstream 395670 36005425 ~ 36012334 (+)
LOC110507976 LOC106581370 coding upstream 585120 35804534 ~ 35822884 (+)
LOC110507975 LOC106581363 coding upstream 888895 35465699 ~ 35519109 (+)
LOC110507973 LOC106581395 coding upstream 1243545 35156006 ~ 35164459 (+)
LOC110508005 LOC106613226 coding downstream 26845 36438225 ~ 36440709 (+)
LOC110507218 LOC106591049 coding downstream 42381 36453761 ~ 36546497 (+)
LOC118944683 NA coding downstream 199355 36610735 ~ 36618726 (+)
LOC118936607 LOC106581404 coding downstream 267393 36678773 ~ 36703523 (+)
LOC110507948 LOC106581405 coding downstream 296546 36707926 ~ 36863967 (+)
G2078544 NA non-coding upstream 15928 36391390 ~ 36392076 (+)
G2078530 NA non-coding upstream 54064 36352720 ~ 36353940 (+)
G2078529 NA non-coding upstream 56358 36351323 ~ 36351646 (+)
G2078515 NA non-coding upstream 102782 36304553 ~ 36305222 (+)
G2078493 NA non-coding upstream 105340 36263506 ~ 36302664 (+)
G2078562 NA non-coding downstream 24806 36436186 ~ 36437921 (+)
G2078571 NA non-coding downstream 41434 36452814 ~ 36453166 (+)
G2078572 NA non-coding downstream 41929 36453309 ~ 36453542 (+)
G2078616 NA non-coding downstream 121289 36532669 ~ 36536033 (+)
G2078617 NA non-coding downstream 127950 36539330 ~ 36539929 (+)
G2078425 NA other upstream 303903 36102874 ~ 36104101 (+)
G2078382 NA other upstream 374005 36033285 ~ 36033999 (+)
G2078296 NA other upstream 475495 35932115 ~ 35932509 (+)
G2078253 NA other upstream 536271 35870485 ~ 35871733 (+)
LOC110536894 NA other downstream 862106 37031161 ~ 37276857 (+)
G2079197 NA other downstream 867725 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 955359 37366739 ~ 37368136 (+)
G2079657 NA other downstream 1404498 37815848 ~ 37819286 (+)

Expression


Co-expression Network