G2078616


Basic Information

Item Value
gene id G2078616
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36532669 ~ 36536033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2376609
catcaagacactatcaaacactacagcatcaatacactgtcaaacactacagcatcaagacactatcaaacactacagcatcaagacactgtCAAACAATACaacatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaacacactataaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagccactgtcaaacactacagcatcaagacactatc
>TU2376612
catcaagacactatcaaacactacagcatcaatacactgtcaaacactacagcatcaagacactatcaaacactacagcatcaagacactaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaacacactataaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacacactaaaacactacagcatcaagacacactaaaacactacagcatcaagacactatcaaacactacagcatcaagacacgctaaaacactacagcatcaagacactatccaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacacgctaaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaaga
>TU2376619
catcaagacactatcaaacactacagcatcaatacactgtcaaacactacagcatcaagacactatcaaacactacagcatcaagacactaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaacacacactaaaacactacagcatcaacacactataaaacactacagcatcaagacacactaaaacactacagcatcaacacactatcaaacactacagcatcaatacactatcaaacactacagcatcaagacacactaaaacactacagcatcaacacactataaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacacactaaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacacgctaaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacacactaaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacacactaaaacactacagcatcaacacactataaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagacactttaaacactacagcatcaagacactatcaaacactacagcatcaagacactatcaaacactacagcatcaagccactgtcaaacactacagcatcaagacactatc

Function

NR:

description
uncharacterized protein LOC110491270, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2376609 False 427 lncRNA 0.39 2 36532669 36536033
TU2376612 False 655 lncRNA 0.39 3 36532669 36534675
TU2376619 True 1103 lncRNA 0.38 5 36532669 36536033

Neighbor

gene id symbol gene type direction distance location
LOC110508005 LOC106613226 coding upstream 91960 36438225 ~ 36440709 (+)
naalad2 LOC106581411 coding upstream 151658 36365655 ~ 36381011 (+)
LOC110507977 fzd4 coding upstream 520335 36005425 ~ 36012334 (+)
LOC110507976 LOC106581370 coding upstream 709785 35804534 ~ 35822884 (+)
LOC110507975 LOC106581363 coding upstream 1013560 35465699 ~ 35519109 (+)
LOC118944683 NA coding downstream 74702 36610735 ~ 36618726 (+)
LOC118936607 LOC106581404 coding downstream 142740 36678773 ~ 36703523 (+)
LOC110507948 LOC106581405 coding downstream 171893 36707926 ~ 36863967 (+)
LOC110536894 NA coding downstream 495128 37031161 ~ 37276857 (+)
mre11a mre11a coding downstream 782683 37318716 ~ 37357606 (+)
G2078572 NA non-coding upstream 79127 36453309 ~ 36453542 (+)
G2078571 NA non-coding upstream 79503 36452814 ~ 36453166 (+)
G2078562 NA non-coding upstream 94748 36436186 ~ 36437921 (+)
G2078548 LOC106581410 non-coding upstream 121289 36408004 ~ 36411380 (+)
G2078544 NA non-coding upstream 140593 36391390 ~ 36392076 (+)
G2078617 NA non-coding downstream 3297 36539330 ~ 36539929 (+)
LOC110507218 LOC106591049 non-coding downstream 7141 36453761 ~ 36546497 (+)
G2078854 NA non-coding downstream 43024 36579057 ~ 36579433 (+)
G2078855 NA non-coding downstream 43512 36579545 ~ 36580718 (+)
G2078871 NA non-coding downstream 60474 36596507 ~ 36596722 (+)
G2078493 NA other upstream 230627 36263506 ~ 36302664 (+)
G2078425 NA other upstream 428568 36102874 ~ 36104101 (+)
G2078382 NA other upstream 498670 36033285 ~ 36033999 (+)
G2078296 NA other upstream 600160 35932115 ~ 35932509 (+)
G2079197 NA other downstream 743072 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 830706 37366739 ~ 37368136 (+)
G2079657 NA other downstream 1279845 37815848 ~ 37819286 (+)
G2080014 NA other downstream 1408899 37944932 ~ 37945151 (+)

Expression


Co-expression Network