RNA id: XM_021588404.2


Basic Information

Item Value
RNA id XM_021588404.2
length 3015
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110507976
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35804534 ~ 35822884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAACACTGCTGTAGTAGTAAAGGTTATTAAACTACCAAAGCGAAACGACTTCCCCTGACCACACCCTCCATCATGCTTTGGAATGAAGAACTGCATAAGTGTGCTGAGAACACTTCACACAACAACCTCTCCGACTTCACACTCAATTACAGCTGTTAAGAAAGGCAAAGCATGGACGTGGTCTATGGGATGTATGTGCAATGGCTACTTCGGTGTGTCCTCTTCCTGATATCGCTGCCGTTTCTTCAAAGTAAAGatgtCACCATGGTGATAGGAGAGGTGGGCGGGGCTGTGACTATCCCCTGTACCTCAGACCTCTTTGAGAACCATCTGGTCTTCATGTACGTTCAGAGACCTGGTTCCAATGGAAATAATCCCCGGTTTATTAATGGCTACCATACGAAGAAGCGCTTAGACCCTAAGGAGTACACTAACCGTACACATGTAGACCCCAGACAGCGAACAATGAAGCTGTGGAGTATATTGCCGTCAGATGAGGGGTTGTACGAGTGCCACATTCAATACCAAACCAAGAAGAAGCAGGAGAACATACAGCTCAATGTGACAGCCAACTACAGCATCCCCATTGTAACGGTGGCCTGTGACAACGTCAGTTGCTTGGTGACGTGTTCCTCCGACAGTGGTTACCCTCGTAGGGACATTGAGTGGAGCCCAAACCCTCCTCTGAACCAGAGCCACTGGAGAGTAGTGAACAGTAGTGATGTGACAGACCCAGTCTCTATGCTGTTCTCTGTCTACAGTTCCATATCCGTCAACTGCTCCTCCGGACCCCGGCTGAACCTCAGCTGTAATGTAGGGGGCGCCCTTTCACAGGAACACACTGTCTGCTGGCCTCAGACAGGCTCTCCTGATGTTTATGTGACCTCTGCCGTTGTGGCTGGTGCTGTTGCTCTGCTGTGTTTCCTGCTGGCTGGGCTGTTTGTCTTCAAGGAAAGGAAGGCTCAGACAGCCAGAGTTGATCAAGATGGGGAGGAAGCAGCTAGGCCAGCTGAAAGAGTACAGCTCACCTGTAGGAACCTAGATTCTTAATGGAACTTGGAGTCTGTAACATTGTACACTTGGAACCAAGAATATGGAAGGTTATTTTATTGATAAGATATAAATAAATCTGAAGTGCTATCTTCTGATGGGACCAGGGGATGGTCACTGAGGTGACCTACATATTGCCTGGACTTGGCGTCATTGAAAATGAGGTTAACTTTCCTCTCCACACTGGAGGACAGGCTGGACATGAGAGGTGTTTTCATGATTTTGAGGAAGACTGGGAGTTGTATAAATATTTAACCAGTATGTTCAAATGACTGAGTTCCAATGAAGAACTAGACATGCAATGACTGTCCTCAATGTGTGCACTATTGTAAGACATGGAGTTAACCAGGGAAATGTGTTAAAGTCAATATACATGTGGATTAGGACTAATAACCTGCACTGCACTTAAACAGAGTGTACACGTATTTAATGTGCACTTATCAGGGGTTGACTGTATTCAACTGACTCATGTGCAATTGAAAACTGTGTAACTGTGAAGCTATCTGTGTATTAACCACAGTTTACGCAGTACAGACATGGCCACAACTTGGGGCTTGGTTCCTCTATAGGtttttcctaggttcctgccttctggggagtttttcatgATCTGCCTCTGTATTTTTGctaatgtacgaagggctttatgaaGTACATTTGAGATGATGAACGGGGGAAGTGAATGTGTCTGTCAGGAGAAGATCTTATATTCCAGTTTCTATACCTGCATCTACCAGTAAGACTGAGTCCACCCCACATATTCCTGCCTGTATGAACTGGTTTTAAGGAACTACATAACATGTGCTGGTTGTTCAGTGAGACAGCAAAAGGTGGATGATGAATAGAACAAATGTTTACTGATTATttcaggatttaaaaaaaaggtgAATCTTTGATATGTATGCTACATATTTATGACATATTAAGTTGTTCTCATGTAAAATACTCTTGAAGGCTACATAATATTTGTAACCTCTTTTTGATAAGTTATGAATAAGTTATTTGTGTTAAATTATGTCTTTCGACTTTATACTAGTGCATATTCTATTTTCTCTGCTTCGAATATAATTAAAGTGATAAAGCTGTTGACAAAATTTGTTGAAttgtataaatcatttcaatttTCTAAATCAGTTACATAACCTTTGGATTGCTCAAACTCaataacgtaatctgattactttcagatacatttggattactttccccttaagaggcattagaacacaggtgtcaaactcaggagggcagagtgtctgtgggtttttgctcctcccttgtacagtacttgattgatgaatcaAGGTCACTATTTAGTAAGGAACACCACATCTGGTTGTCTAGGTTTTTAttgaaagggggaaaaaaactaaaacCTGCTGACACGATGtgttacatctgctcctgccacaccctctactgctcatcctgtgtctcatTGACCTGCCTCCACTCCgccagtgctctctccctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgattgtgtGGGCAGGGTCAGGTGtcctggagtcagagcagatccccaccagctgcaacccattccataatcaagacctctacaaatactcagccctgccacttccacgctgtcagatcgtaatctctgctcagtcagtctatgTTTCTAGCTGTTTAGatcctgttgtgcctgttttccctTGCCTGATTCTGgtttcctctccgctacagttctgaCTGATCTGACTCTGGTTCCTGTCCCCAGTCCCACGTCACATCATCCTGCTtctctgtcctggattccccaaTCTActgctcccttggattccccatccggacctgcttaccctgttcCAACCCCTCTCAGCCTCCGCTCCTGGTTTCCTACAACCCGCCCGAGCTTCACCTGGCCTGCACGCTACCTTCCCCCTGTGTGTTAATAAATACCTTGAATACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2376068 lncRNA upstream 18338 35784458 ~ 35786196 (+) True G2078171
TU2376050 lncRNA upstream 50051 35754247 ~ 35754483 (+) True G2078155
TU2376024 lncRNA upstream 66005 35736266 ~ 35738529 (+) True G2078132
TU2376026 lncRNA upstream 67339 35736698 ~ 35737195 (+) True G2078133
TU2376001 lncRNA upstream 91589 35712557 ~ 35712945 (+) True G2078110
TU2376138 lncRNA downstream 16829 35839713 ~ 35839914 (+) True G2078238
TU2376140 lncRNA downstream 22255 35845139 ~ 35850835 (+) False G2078240
TU2376141 lncRNA downstream 24117 35847001 ~ 35850835 (+) True G2078240
TU2376157 lncRNA downstream 43992 35866876 ~ 35868803 (+) True G2078251
TU2376162 lncRNA downstream 51536 35874420 ~ 35876639 (+) True G2078255
XM_036965549.1 mRNA upstream 285425 35465699 ~ 35519109 (+) False LOC110507975
XM_021588401.2 mRNA upstream 640075 35156006 ~ 35164459 (+) True LOC110507973
XM_036965275.1 mRNA upstream 693492 35014631 ~ 35111042 (+) False gucy1a2
XM_036965014.1 mRNA upstream 794730 34970520 ~ 35009804 (+) True cwf19l2
NM_001124239.2 mRNA upstream 850400 34953147 ~ 34954134 (+) True rtor1
XM_036965202.1 mRNA downstream 182541 36005425 ~ 36012334 (+) False LOC110507977
XM_036965203.1 mRNA downstream 183149 36006033 ~ 36012334 (+) False LOC110507977
XM_036965204.1 mRNA downstream 183711 36006595 ~ 36012334 (+) True LOC110507977
XM_036965269.1 mRNA downstream 542771 36365655 ~ 36381011 (+) False naalad2
XM_036965270.1 mRNA downstream 542771 36365655 ~ 36381011 (+) False naalad2
TU2376088 other upstream 6544 35797572 ~ 35797990 (+) True G2078188
TU2375966 other upstream 111701 35684135 ~ 35692833 (+) True G2078087
TU2375601 other upstream 291021 35470330 ~ 35513513 (+) True G2077777
TU2375598 other upstream 296560 35465990 ~ 35507974 (+) True LOC110507975
TU2375336 other upstream 657865 35146144 ~ 35146669 (+) True G2077547
TU2376159 other downstream 47601 35870485 ~ 35871733 (+) True G2078253
TU2376207 other downstream 109231 35932115 ~ 35932509 (+) True G2078296
TU2376308 other downstream 210401 36033285 ~ 36033999 (+) True G2078382
TU2376352 other downstream 279990 36102874 ~ 36104101 (+) True G2078425
TU2376423 other downstream 478054 36300938 ~ 36302042 (+) False G2078493

Expression Profile