RNA id: XM_021588401.2


Basic Information

Item Value
RNA id XM_021588401.2
length 5199
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110507973
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35156006 ~ 35164459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAACAAGATAATCAAGGGAGAACATGGCAAGTTATTACTTTCTATTGGAATAACACATTCAACGAACAATGGATGGTTTGGCAAACATTAACTGTCCGATTCTCTTTCTCCTTGCGCTGCACACACGGGGCTGCCAGCAACCACTCGGACTGGGTCCACGAGTCACACCGGAGTGCCAGTTTCAGTGAAGAACCGGTAGACCGAAGTTCCGCTTTTAGCTAACGTCACCTCTCGTAAAGCATTTGGCTAGCACTGACAGCTTCTGTGAAGCATCTAGCCATTTTAGCTAACTGCTAGCTGTGAGGCAAGTGTGTCAGCATTTTAAGCACTGTAAATGCCACAAAAACATAGTTAACTAGCAACGCATGAGCGCTTGATAAGGCAGAATGTCACCTCTTGAACAGCGGTGTTTGCTTCACTTCAAGAACACGACAGCTGGCTATAACAACACATGACTTGTGGAGCCACATCCGGAACCACTGAAGGAACGTTACACGTCAGAATTGGTGGTGGCAAAGGACGGACCAATGGGAAGGACGGACCAATGGGAAGGATGTTTACCTCGAGTCTCAACAATGTGTCGTTCTGATTCAGATTTTGGCGTTGATGAGCATCTGATTTATTTTCTACGATTGATAAGGAGGAAGCTGAGCTCTGTTCTGGTTGCCTGAGGACACACCTGCTGTAACACTTACCTGTGCTGTGTGAACCCTGGCCTTCGCGTGAACTAAGGGAGTGTGTCACCTGAGGCAGGACAGCGGGATTCTTCTCAACCTTCATCCATCGATCTACAACACTCACTTCTTGAAGTCCAAGCTAGCCtgactgctctctccctctctctgtatatattcatccatccatccctctttcACACTTCTCCATGCTTCTGCCCAATTATGTCCCTCAGTAAGACTTCTGTCTCTCCGTCCCTCCGtgatccatctctctgtccatctgcgCCCCTCCTGACCGCCAGGGTGGATTTCCTGCAGATGAAACActtgaagaggaagaggaagagtaaCTACAGCGTTCGTGAGACACAGACACTGATCCGGGAGATCCACAAAAGACGAGACGTGCTGTTCTCCCGCCAGCAGAACACCGCCATCAACGAGCTGAAGAGACGAGCCTGGGAGGAGGTAGCAGGAGGCGTCAACTCACTGGGAGAGGGCGAGCTACGCACATCTTCAGAGGTGAAGCGGCGTTACCTGGACTGGCGGTCGCTAATGAAGAGGAAGCAGCTCCATGCTGAGCTGTCTCTCTCCACAGGGCTGAAGGCAGAGTATGATCCGTCCTCCCCTGAACACAACGCCTCACTGGGCTCAAGGGACCAGTCGCTCGACCTCTCTAGCTTTCCCAAGGAGTCCCAGTGCGACTGGCAGGACCTGGCGGATCTTGGAGAGCCCAGAAGACACGCAATGTCTACAGGGAttaagatggaggaggaggtcaaTGGATACAGGcTGGAGGGTGATAGCGGAGATggtgaggtagaggaggaggaggatgatgatgatgccgATGATGAAGAAGATTGTTTCCCCTCCCTCCTACCCGACATGGGAGAGCGCGATGTACGTATCCCGGAAGTCTTCTCACACATTGATGAGTTTGGAATGCTCAGCGCCTCACAGGGGACGGCGACCTCAATAAATCGGGACCTCTCACTGGGCGGAATGGGCTTTGCTGGGTTAGGACTGGCCAATCACGAGAGTACGGGACTTCTGGTTGGTTTGGAGAAGCAGCGTGTGGAACTGGAGAAGCAGCGTGTGGCTGTGGAAACGGAGCGGCTagcggtggagagagagagactcctactggagaaggagagactgagTCAGtcggaggtggagagggagagattgcaactggagaaagagagattgcagctggagaaggagagacTTAGGCTGTTGCTCATGAACCAATCAGAACGGGCTTCTGCTCCCCCCCAGCAaggccctccctcctcctccactcctacCACATCCTCTTCctctgctgtggatggacagaaTGAGAGAAATGAGAATAAACCCCGGCTTTCTATGATAGATCTGGAGGGTGAGAGACTGAGCCTGGAGAAGGAGCGACTGCAGTTAGAGAAGGAGAGGCTGCAGTTCTTTAAGTTTGAGTCTGGACGACTGCAGATAGAGCGGGAGAGACTAGAGGTGGAGAGAATGCAGCTTCAACAGGACCAGGGTCattgagagagggaggataggattgcatcaaataacattttgtctcatgcttcgtaaacaacaggtgtggactaacagtgaaatgcttatgggCCGTTCCCAATAATGTAGAGAGGAAATAGAGAAATGGTtgaaagatgatgatgatgatgatgatgataataatagatacataatTAGAAATGAAAAGCTTTGtaatatacatggggtaccagtaccaatttgatgtgtaggggtacaaggtaattgaggtacatacagtggcaagaaaaagtatgtgaaccctttggaattacctggatctCTGCATAAATTagacataaaatttgatctgatcttcatctacaGTAAGTCACatcaatagacaaacagtctgcttaaactaataacatacAAATGATTGTATTTGTCTTGTCTTTATTGAATAGATCAGTTAAACattcagtgtaggttggaaaaagtatgtgaacctctagactaatgacttctccaaaagctaattggagtcaggagtcagctaacctggagttgaatcaatgagacgagattggagatgttggttagagctgccctgccccatCAACACTCACAACAttagtttgctattcacaagaagcattgcctgatttgaaccatgcctcaaacaaaagagatctcagaagacctaagattaagaattgttgccttgcatgaagctggaaacggttacaaaagtatctctaaaagtcagtccacggtaagacaaattgtctagaAATTGAGAAAtgtcagcactgttgctactctccctaggagtgtccgtcctgcaaagatgactgcaagagtacagcgcagaatgctcaatgaggttaaggaGAATCCTGGAGTGTTAGctaagacttacagaaatctctggaagatgctaACGTCTCTGATGGgtctacaatacgtaaaacagtaaacaagaatggtgttcatgggaggacaccatggaagaagccactgctgtccaaaaaaaacattgctgtacATCTGAAGTTCACAAAAGatcacctggatgttccacagtgctactggcaaaatattctgtggacagatgaaaccacagttgacttgtttggaaggaacacacaacactatgtgtggagaagaaaaacacagcacaccaacatcaaaaccttatcccaactgtaaagtatggtggagggagcatcatggtttggggctgctttgctgcctcagggcctgggcagcttgctatcattgatggaaaaatgtattcccaagtttatcaagacattttgcaggagaatgtaaggcaaatctgtccaccaattgaagctcaatagaagttaggtgatgcaacaggacaacgacccaaaacacagaagtaaatcaacaacagaatggcttcaacagaagaaaatacaccttctggagtggcccagtcagtcctgaccaCAACCCGATTTGAGAtactgtggcatgacctcgagagcggttcacaccagacatcccaagaatattgctgataTAAAAcagttttgtaaggaggaatggtccaaaattcctcttgaccgttgtgcaggtctgatccgcaactacagaaaacgtttggttgaggttattgctgccaaaggagggtcagtcagttattaaatccaagggttcatatacttttcccaccctgcactgagaatgtttacacggtgtgttcaataaagacatgaacacatataattgtttgtgtgtttatgagtTCAAGCAGactgtgtctattgttgtgacttagatgaagatcagatcacattttatgacccatttatgcagaaatccaggtcattctaaagggttcacttactttttcttcccactgtatgtacatataggaATAACGTGACAGGTAATGAACAGTAACAGCAGCGTGTGTGATGAGCATTAAGGGATATCTACGAGAGAAGTGCCTGGAAGAAAGGTCAAAGAAGTGGGGAGCAGTGTGGTCTTTATCTCAGTGTAGACAGGCCAGGTATGAGCCTCTATGAGCAGTCACCTCCATGGTccacctctcctgtctgtctcagacCGCTCCAATAGCTTGTTACTGTTCAGCTTGATACACAACAGCTGAATAGCTCAACCAATCAGACAGTACAACCAtcaaactgaccttagatcaacAGGGCGTCTTCATCCTACTCCAGGTTGTTGGCAAAAGGATGTTATCCAGTTTTATTTCCTGTAGAGGCGGGATCAAGATTCAAACTGCCACTCAGAGCCGCTACCTATCACATTTAAAACATCTCCCTGCCAATCATTCTGTAATGCTTGTGGACTTTGTTGTGTTAAAATATGGATTATTTCAATTCAAAGGAGATGTTAATTGAACACATATAATCTGTgtctaccacaggaggttggtggcaccttaattgggtagGACAGGcttatggtaatggctggagcggcaTGGTTTCAAATACACCAATcacgtggtttccatggtttccatgtgtttgatgccattccattcactccgttccagATGTTATTGTGAacagtcctcccctcagcagcctccactggtgtctACAATGTGTGTTTGTTTCAAGTGAGTGGTTGTGTGCTGGGAGAAACTGTTGTTTTGTGTAGCTCAGTACTAACGTCCATGTACTGCACAGAAAGGGGACATAATGTAGAGTAGCTGTAAACTCAAAGTACAGAATgctctacagtatactactgtatGTGACTCAAACCAATGTCATGTAAGGCTTTACAGAGATTTTACTTTCATTTTACCAAACCTTTTGTCTTTTTTAATGGTGCTATTTTGATTGTGAGTTTGTGGTTTAGTACTATGGTGGAATGTTCTATATTAGCTGAGTCATCCAAGGAAAGAGTTGAATATCTCTGCAGGTTCTGTCTATTTTAAGAGATGAGAAAAGGATAATGTTGCCTATATGCTTTCTGCATTGCCTTTAAGACTCACAATAAAGGATATAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2375331 lncRNA upstream 19691 35135614 ~ 35136315 (+) True G2077542
TU2375268 lncRNA upstream 43109 35111782 ~ 35112897 (+) True G2077482
TU2375272 lncRNA upstream 136871 35018535 ~ 35019135 (+) True G2077486
TU2375266 lncRNA upstream 142905 35012779 ~ 35013101 (+) True G2077480
TU2375137 lncRNA upstream 196534 34959214 ~ 34959472 (+) True G2077364
TU2375435 lncRNA downstream 4784 35169243 ~ 35171351 (+) True G2077637
TU2375536 lncRNA downstream 215340 35379799 ~ 35380077 (+) True G2077731
TU2375555 lncRNA downstream 258777 35423236 ~ 35428317 (+) False G2077749
TU2375556 lncRNA downstream 258777 35423236 ~ 35426068 (+) False G2077749
TU2375557 lncRNA downstream 263076 35427535 ~ 35429843 (+) True G2077749
XM_036965275.1 mRNA upstream 44964 35014631 ~ 35111042 (+) False gucy1a2
XM_036965014.1 mRNA upstream 146202 34970520 ~ 35009804 (+) True cwf19l2
NM_001124239.2 mRNA upstream 201872 34953147 ~ 34954134 (+) True rtor1
XM_036965034.1 mRNA upstream 213799 34941254 ~ 34942207 (+) True LOC110507209
XM_036965033.1 mRNA upstream 219901 34934043 ~ 34936105 (+) True LOC110507208
XM_036965549.1 mRNA downstream 301240 35465699 ~ 35519109 (+) False LOC110507975
XM_021588404.2 mRNA downstream 640075 35804534 ~ 35822884 (+) True LOC110507976
XM_036965202.1 mRNA downstream 840966 36005425 ~ 36012334 (+) False LOC110507977
XM_036965203.1 mRNA downstream 841574 36006033 ~ 36012334 (+) False LOC110507977
XM_036965204.1 mRNA downstream 842136 36006595 ~ 36012334 (+) True LOC110507977
TU2375336 other upstream 9337 35146144 ~ 35146669 (+) True G2077547
TU2375270 other upstream 125669 35015179 ~ 35030337 (+) True gucy1a2
TU2373744 other upstream 441450 34712576 ~ 34714556 (+) True G2076102
TU2373636 other upstream 653301 34502249 ~ 34502705 (+) True G2076000
TU2373037 other upstream 1221105 33916748 ~ 33934901 (+) False robo1
TU2375598 other downstream 301531 35465990 ~ 35507974 (+) True LOC110507975
TU2375601 other downstream 305871 35470330 ~ 35513513 (+) True G2077777
TU2375966 other downstream 519676 35684135 ~ 35692833 (+) True G2078087
TU2376088 other downstream 633113 35797572 ~ 35797990 (+) True G2078188
TU2376159 other downstream 706026 35870485 ~ 35871733 (+) True G2078253

Expression Profile