RNA id: TU2375536


Basic Information

Item Value
RNA id TU2375536
length 279
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G2077731
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35379799 ~ 35380077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgctcttttcatgcctcctccgtcacatttctcggttctgttatttccgctgaaggcattaagatggatcccgctaaggtccaagctgtcattgattggcccgtccctaagtcacgcgtcgagctgcagcgctttctcggcttcgcgaacttctatcgtcgtttcatccgtaatttcggtcaggtggcagctcctctcacagctcttacttctgtcaagacgtgctttaagtggtccgtttccgcccagggagcttttgatctcctcaagaatcgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2375435 lncRNA upstream 208448 35169243 ~ 35171351 (+) True G2077637
TU2375345 lncRNA upstream 221014 35158095 ~ 35158785 (+) True G2077556
TU2375344 lncRNA upstream 222876 35156700 ~ 35156923 (+) True G2077555
TU2375331 lncRNA upstream 243484 35135614 ~ 35136315 (+) True G2077542
TU2375268 lncRNA upstream 266902 35111782 ~ 35112897 (+) True G2077482
TU2375555 lncRNA downstream 43159 35423236 ~ 35428317 (+) False G2077749
TU2375556 lncRNA downstream 43159 35423236 ~ 35426068 (+) False G2077749
TU2375557 lncRNA downstream 47458 35427535 ~ 35429843 (+) True G2077749
TU2375562 lncRNA downstream 52894 35432971 ~ 35433210 (+) True G2077754
TU2375567 lncRNA downstream 57957 35438034 ~ 35536860 (+) False G2077758
XM_021588401.2 mRNA upstream 215340 35156006 ~ 35164459 (+) True LOC110507973
XM_036965275.1 mRNA upstream 268757 35014631 ~ 35111042 (+) False gucy1a2
XM_036965014.1 mRNA upstream 369995 34970520 ~ 35009804 (+) True cwf19l2
NM_001124239.2 mRNA upstream 425665 34953147 ~ 34954134 (+) True rtor1
XM_036965034.1 mRNA upstream 437592 34941254 ~ 34942207 (+) True LOC110507209
XM_036965549.1 mRNA downstream 85622 35465699 ~ 35519109 (+) False LOC110507975
XM_021588404.2 mRNA downstream 424457 35804534 ~ 35822884 (+) True LOC110507976
XM_036965202.1 mRNA downstream 625348 36005425 ~ 36012334 (+) False LOC110507977
XM_036965203.1 mRNA downstream 625956 36006033 ~ 36012334 (+) False LOC110507977
XM_036965204.1 mRNA downstream 626518 36006595 ~ 36012334 (+) True LOC110507977
TU2375336 other upstream 233130 35146144 ~ 35146669 (+) True G2077547
TU2375270 other upstream 349462 35015179 ~ 35030337 (+) True gucy1a2
TU2373744 other upstream 665243 34712576 ~ 34714556 (+) True G2076102
TU2373636 other upstream 877094 34502249 ~ 34502705 (+) True G2076000
TU2373037 other upstream 1444898 33916748 ~ 33934901 (+) False robo1
TU2375598 other downstream 85913 35465990 ~ 35507974 (+) True LOC110507975
TU2375601 other downstream 90253 35470330 ~ 35513513 (+) True G2077777
TU2375966 other downstream 304058 35684135 ~ 35692833 (+) True G2078087
TU2376088 other downstream 417495 35797572 ~ 35797990 (+) True G2078188
TU2376159 other downstream 490408 35870485 ~ 35871733 (+) True G2078253

Expression Profile