RNA id: XM_036965549.1


Basic Information

Item Value
RNA id XM_036965549.1
length 1851
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110507975
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35465699 ~ 35519109 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGGGACAATCCTCGGGACAATCCTCCACTCTGATCAATTCACCGACTGAAGTTTCACACAAACCAGCGCGCGTGTAGAGCTacagtgagagacacacacactctcagcctTGAAGTTAAATTGTTGGAAAGCATGTCGAGCTCGCTCTGATATCAGAGAAATTGAACTAAGGAGGATCATTTCACATGCCATTACCAGTGTGGATTAACTCGCGGTAAAGCGATAGAAAAAATCGGCGCCCGTACTTGTCTGTGGACATGAATATATGAACCTGCTCTGCATTCTGTAGCGGCGGAGCTGGTGTATGGTGAGTTTGAGACAGGCAGGTCGCTCCAGTCTTCTGTGAAAAGCGACTCGGGAGAAATGATGTGAACAGCACGAACGTTTTAAGAAAACTTTTACTTGAGTCTCCAGGGAaaacaaaagtagctaattggtcTCTTTTCAGAACAATAGGTGGTTCTTCCACGCTTGGGATTTTAGTTTAGTGTGTAACCTCCACGGATAGAATGAACAGCTCTGGGCGCGTGGCACTGGCGCTGTTGCTCGCGCTGCTCGTGGGCTTTACCCGGGGCACACAAGGCCAGGTAGTGTCCGCCAAGGTGGTGAGGTCTTCTAACGTGAGGCAACATGACTTGTACCGGAAAGAAGAGGTCGTCACGGTAACGGCAACGGGAGGAGTCATCCAGAGCCCCCGCTTTCCTAACGCCTATCCCAGGAACCTGCAGTTGTCATGGAAACTACTGTCGCCCCACAACACCCGCATCACCCTGGAGTTTGACTCCCACTTTGCACTGGAGGAACCAGAGAACGAAGTCtgcagATATGACTTTGTGGAGGTGGAGGACATCTCAGAGACCAGTACTATTGTCTGGGGGAGATGGTGTGGTCAGAGAGTCCCCCCTCGACTTACCTCCAAAACCAACACCCTCAAAGTCTCCTTCAAGTCAGACGACTACTTCGTGGCAAAGCCTGGCTTCAAACTCCACTTCTCTCTACAGgATGATTCTCTTCCTGCAGCGTCAAAGACTAACTGGGAGACTGTGACCCTGATGGAGGACAGTCTGTCAGTGTTGGCTCCAGCGGTGACTGATGTTCCTCTGACAGCAGCGGCGTTGGACCAGACCATAGCAGCCTTCAACACAGTGGAGCAGCTCCTCCGCCACCTCAACCCTGACAGCTGGAGACAGGACCTGGACAGCTTGTACAGAGAGACAGCCATGTACAGACCCCGGGCCTACCAGCACAACAGACAGAACAAGAtTGACCTGGACCGTCTGTATGATGACGTGAAACGCTACAGCTGTACACCTCGGAACTACTCTGTCAACCTGAGGGAGGAGCTGAGGGCCACCAACGCCGTGTTCTTCCCACGATGCCTACTGGTGCAGCGCTGTGGGGGGAACTGTGCCTGTGGGACGGACAACTGGAACAGCTGTACCTGCAGCCCGGCCAAGACCAGTGACAAACTACACGAGGTGTTGAAGTATGCTCCTGAGGTGGGAGGTTATTCACGGCGTCAGACAGTTCGTGTCAGCTGGGCCCTAGAGGAGGTCCACTTGACGCACCACGAGCGCTGTGACTGTGTTTGTCCCTCCAGACCACCCCGCTGAGAGACAATGGGACAGGGGGACACAGCTCTGGGACTAACTGCTGTttatatctccatctctctctctctgtagcgctCCCCTGCCATCCATCCACATACCAACCTGTTACAAACCTAGTCACCCACAGCCACCCATACCCCTCTTCTGGTCATGAACTGTGCCCTGCTTCCACCCAGCCAAAACCCAaatgtacccccccccctccccccgcccACTGTCCGAGCCCCCAACATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2375562 lncRNA upstream 32489 35432971 ~ 35433210 (+) True G2077754
TU2375557 lncRNA upstream 35856 35427535 ~ 35429843 (+) True G2077749
TU2375555 lncRNA upstream 37382 35423236 ~ 35428317 (+) False G2077749
TU2375556 lncRNA upstream 39631 35423236 ~ 35426068 (+) False G2077749
TU2375536 lncRNA upstream 85622 35379799 ~ 35380077 (+) True G2077731
TU2375847 lncRNA downstream 17786 35536895 ~ 35537175 (+) True G2077979
TU2375945 lncRNA downstream 150668 35669777 ~ 35670309 (+) True G2078072
TU2376001 lncRNA downstream 193448 35712557 ~ 35712945 (+) True G2078110
TU2376024 lncRNA downstream 217157 35736266 ~ 35738529 (+) True G2078132
TU2376026 lncRNA downstream 217589 35736698 ~ 35737195 (+) True G2078133
XM_021588401.2 mRNA upstream 301240 35156006 ~ 35164459 (+) True LOC110507973
XM_036965275.1 mRNA upstream 354657 35014631 ~ 35111042 (+) False gucy1a2
XM_036965014.1 mRNA upstream 455895 34970520 ~ 35009804 (+) True cwf19l2
NM_001124239.2 mRNA upstream 511565 34953147 ~ 34954134 (+) True rtor1
XM_036965034.1 mRNA upstream 523492 34941254 ~ 34942207 (+) True LOC110507209
XM_021588404.2 mRNA downstream 285425 35804534 ~ 35822884 (+) True LOC110507976
XM_036965202.1 mRNA downstream 486316 36005425 ~ 36012334 (+) False LOC110507977
XM_036965203.1 mRNA downstream 486924 36006033 ~ 36012334 (+) False LOC110507977
XM_036965204.1 mRNA downstream 487486 36006595 ~ 36012334 (+) True LOC110507977
XM_036965269.1 mRNA downstream 846546 36365655 ~ 36381011 (+) False naalad2
TU2375336 other upstream 319030 35146144 ~ 35146669 (+) True G2077547
TU2375270 other upstream 435362 35015179 ~ 35030337 (+) True gucy1a2
TU2373744 other upstream 751143 34712576 ~ 34714556 (+) True G2076102
TU2373636 other upstream 962994 34502249 ~ 34502705 (+) True G2076000
TU2373037 other upstream 1530798 33916748 ~ 33934901 (+) False robo1
TU2375966 other downstream 165026 35684135 ~ 35692833 (+) True G2078087
TU2376088 other downstream 278463 35797572 ~ 35797990 (+) True G2078188
TU2376159 other downstream 351376 35870485 ~ 35871733 (+) True G2078253
TU2376207 other downstream 413006 35932115 ~ 35932509 (+) True G2078296
TU2376308 other downstream 514176 36033285 ~ 36033999 (+) True G2078382

Expression Profile