G2077749


Basic Information

Item Value
gene id G2077749
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35423236 ~ 35429843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2375555
tcatcattactactaccatcatacaactaccatcatcattacaactaccatcatcattactactaccatcatacaactaccatcatcattacaactaccatcatcattgcTACTACCATCaacattacaactaccatcaccattactactaccatcatcaacacaactactaccatcatcattataacTACCATCATCgtcacaactaccatcatcattacaactaccatcatcattacaactaccatcaccattactactaccatcatcattactactaccatcatcattactactaccatcatcattactactaccatcatcattacaactaccatcatcattactactaccatcatcattactactaccatcatcattacaactaccatcatacaactaccatcatcatacaactaccatcatcattacaactaccatcatcattaccactaccatcatcattacaactaccatcatcaatacaactaccatcatcattacaactaccatcatcattaccactaccatcatcattactactaccatcatacaactaccatcatcattacaactaccatcatcattacaactaccatcatcaatacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattactactaccatcatcatcattacaactgccatcatcattacaactaccatcatacaactaccatcatcattactactaccatcatacaactacca
>TU2375556
tcatcattactactaccatcatacaactaccatcatcattacaactaccatcatcattactactaccatcatacaactaccatcatcattacaactaccatcatcattgcTACTACCATCaacattacaactaccatcaccattactactaccatcatcaacacaactactaccatcatcattataacTACCATCATCgtcacaactaccatcatcattacaactaccatcatcattacaactaccatcaccattactactaccatcatcattactactaccatcatcattactactaccatcatcattactactaccatcatcattacaactaccatcatcattactactaccatcatcattactactaccatcatcattacaactaccatcatacaactaccatcatcatacaactaccatcatcattacaactaccatcatcattaccactaccatcatcattacaactaccatcatcaatacaactaccatcatcattacaactaccatcatcattaccactaccatcatcattactactaccatcatacaactaccatcatcattacaactaccataatcattacaactaccatcatcattactactaccatcatcattactactaccatcatcattacaactaccatcatcattactactaccatcatcattactactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatacaactaccatcatcattacaacgaCCATCATCATTAGAActgccatcatcattacaactaccatcatcattactactaccatcatcattattactaccatcatcattacaactaccatcatcattacaactaccatcatcattactactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactacaatcatcattacaactaccatcatcattactactaccatcatcattacaactaccatcatcattacaactaccatcatacaactaccatcatcattacaacgaCCATCATCATTAGAActgccatcatcattacaactaccatcatacaactaccatcatcattacaactactgtcatcattacaactaccatcatcattacaactaccatcatcattactactaccatcatcattactactaccatcatcattacaactaccatcatcattacaactaccatcatacaactaccatcatcatacaactaccatcatcatacaactaccatcatcattacaactaccatcatcattactactaccatcatcattacaactaccatcatcattacaactacaatca
>TU2375557
attactactaccatcatcatacaactaccatcatacaactaccatcatcattacaactaccatcattattacaactgccatcatcattacaactaccatcatacaactaccatcatcattaccactaccatcatcattactactaccatcatacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattactactaccatcatcattacaactaccatcatcattactactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattactactaccatcatcattacaactaccatcattattacaactgccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcattattacaactaccatcatacaactaccatcatcattactactaccatcatcattacaactaccatcattattacaactgccatcatcattactactaccatcatcattcctactaccatcatcattacaactaccatcatcaatacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattactactaccatcatcatcattacaactaccatcatacacctaccatcatcattactactaccatcatcattactactaccatcatcatacaactaccatcatacaactaccatcatcattacaactaccatcattattacaactgccatcatcattacaactaccatcatcattacaactgccatcatcattacaactaccatcatacaactaccatcatcattactactaccatcatcattactactaccatcatcatacaactaccatcatacaactaccatcatcattacaactaccatcattattacaactgccatcatcattacaactaccatcatcattaccactaccatcatacaactaccatcatcattacaactaccatcataattacaactaccatcatcattacaactaccatcatcattacaactaccatcattattacaactgccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcattattacaactaccatcatacaactaccatcatcattactactaccatcatcattacaactaccatcattattacaactgccatcatcattactactaccatcatcattactactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcattacaactaccatcatcatcacaactaccatcatcattacaactaccatcatcattacaactactaCCACGCCCACcattaaactgctatcattatcaTCCACCCTACTGCCCATACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2375555 False 791 lncRNA 0.35 4 35423236 35428317
TU2375556 False 1375 lncRNA 0.34 4 35423236 35426068
TU2375557 True 1501 lncRNA 0.34 2 35427535 35429843

Neighbor

gene id symbol gene type direction distance location
LOC110507973 LOC106581395 coding upstream 258777 35156006 ~ 35164459 (+)
gucy1a2 LOC106581392 coding upstream 312194 35014631 ~ 35111042 (+)
cwf19l2 cwf19l2 coding upstream 413432 34970520 ~ 35009804 (+)
rtor1 rtor1 coding upstream 469102 34953147 ~ 34954134 (+)
LOC110507209 LOC106581391 coding upstream 481029 34941254 ~ 34942207 (+)
LOC110507975 LOC106581363 coding downstream 35856 35465699 ~ 35519109 (+)
LOC110507976 LOC106581370 coding downstream 374691 35804534 ~ 35822884 (+)
LOC110507977 fzd4 coding downstream 575582 36005425 ~ 36012334 (+)
naalad2 LOC106581411 coding downstream 935812 36365655 ~ 36381011 (+)
LOC110508005 LOC106613226 coding downstream 1008382 36438225 ~ 36440709 (+)
G2077731 NA non-coding upstream 43159 35379799 ~ 35380077 (+)
G2077637 NA non-coding upstream 251885 35169243 ~ 35171351 (+)
G2077556 NA non-coding upstream 264451 35158095 ~ 35158785 (+)
G2077555 NA non-coding upstream 266313 35156700 ~ 35156923 (+)
G2077542 NA non-coding upstream 286921 35135614 ~ 35136315 (+)
G2077754 NA non-coding downstream 3128 35432971 ~ 35433210 (+)
G2077758 NA non-coding downstream 8191 35438034 ~ 35536860 (+)
G2077764 NA non-coding downstream 16529 35446372 ~ 35474622 (+)
G2077771 NA non-coding downstream 64244 35494087 ~ 35496134 (+)
G2077979 NA non-coding downstream 107052 35536895 ~ 35537175 (+)
G2077547 NA other upstream 276567 35146144 ~ 35146669 (+)
G2076102 NA other upstream 708680 34712576 ~ 34714556 (+)
G2076000 NA other upstream 920531 34502249 ~ 34502705 (+)
robo1 robo1 other upstream 1488335 33391192 ~ 33935721 (+)
G2077777 NA other downstream 40487 35470330 ~ 35513513 (+)
G2078087 NA other downstream 254292 35684135 ~ 35692833 (+)
G2078188 NA other downstream 367729 35797572 ~ 35797990 (+)
G2078253 NA other downstream 440642 35870485 ~ 35871733 (+)

Expression


Co-expression Network