RNA id: TU2375847


Basic Information

Item Value
RNA id TU2375847
length 281
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G2077979
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 35536895 ~ 35537175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACAATATTTAACTAAGTTAAATCAAACCCTAAAATGTACCATAACCAGTAACCAAATAAACAAACCACTTTTATCAGCAAAAAACAAACTACACCAAAACTCACTACTATAATGGTTCAGATGACAAAATTACTCAGAGACTCACGTTTACATCTCAATAAAACAAATCATCATCTGCTTGCCCCTGTTACAGATGTCTACGTATCAGGGGAAaagctcaaataaccaaattcaacctagctaatttcccgAAACATATGCAGTTATGTTTTTCTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2375567 lncRNA upstream 35 35438034 ~ 35536860 (+) False G2077758
TU2375568 lncRNA upstream 35 35438034 ~ 35536860 (+) False G2077758
TU2375569 lncRNA upstream 35 35438034 ~ 35536860 (+) False G2077758
TU2375570 lncRNA upstream 35 35438034 ~ 35536860 (+) False G2077758
TU2375572 lncRNA upstream 35 35438034 ~ 35536860 (+) True G2077758
TU2375945 lncRNA downstream 132602 35669777 ~ 35670309 (+) True G2078072
TU2376001 lncRNA downstream 175382 35712557 ~ 35712945 (+) True G2078110
TU2376024 lncRNA downstream 199091 35736266 ~ 35738529 (+) True G2078132
TU2376026 lncRNA downstream 199523 35736698 ~ 35737195 (+) True G2078133
TU2376050 lncRNA downstream 217072 35754247 ~ 35754483 (+) True G2078155
XM_036965549.1 mRNA upstream 17786 35465699 ~ 35519109 (+) False LOC110507975
XM_021588401.2 mRNA upstream 372436 35156006 ~ 35164459 (+) True LOC110507973
XM_036965275.1 mRNA upstream 425853 35014631 ~ 35111042 (+) False gucy1a2
XM_036965014.1 mRNA upstream 527091 34970520 ~ 35009804 (+) True cwf19l2
NM_001124239.2 mRNA upstream 582761 34953147 ~ 34954134 (+) True rtor1
XM_021588404.2 mRNA downstream 267359 35804534 ~ 35822884 (+) True LOC110507976
XM_036965202.1 mRNA downstream 468250 36005425 ~ 36012334 (+) False LOC110507977
XM_036965203.1 mRNA downstream 468858 36006033 ~ 36012334 (+) False LOC110507977
XM_036965204.1 mRNA downstream 469420 36006595 ~ 36012334 (+) True LOC110507977
XM_036965269.1 mRNA downstream 828480 36365655 ~ 36381011 (+) False naalad2
TU2375601 other upstream 23382 35470330 ~ 35513513 (+) True G2077777
TU2375598 other upstream 28921 35465990 ~ 35507974 (+) True LOC110507975
TU2375336 other upstream 390226 35146144 ~ 35146669 (+) True G2077547
TU2375270 other upstream 506558 35015179 ~ 35030337 (+) True gucy1a2
TU2373744 other upstream 822339 34712576 ~ 34714556 (+) True G2076102
TU2375966 other downstream 146960 35684135 ~ 35692833 (+) True G2078087
TU2376088 other downstream 260397 35797572 ~ 35797990 (+) True G2078188
TU2376159 other downstream 333310 35870485 ~ 35871733 (+) True G2078253
TU2376207 other downstream 394940 35932115 ~ 35932509 (+) True G2078296
TU2376308 other downstream 496110 36033285 ~ 36033999 (+) True G2078382

Expression Profile