RNA id: XM_036965033.1



Basic Information


Item Value
RNA id XM_036965033.1
length 1118
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC110507208
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 34934043 ~ 34936105 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGAGCCAAACAACAGAACAACACATACGGTAACAGAATTCCTCATCACAGGATTGGATGAAGTACAACACCCAAAGGTGGTGGGACTAGCCATTTTGTTGGTCCTCTTTCTCATTCTGATCGGAAGCATCACTAACATTTGTGTCATAGCATTCAACAAGCCTCTGCATACCCCCATGTACTTTTTTATTTGCTCGCTGGCAGTGGTAGACATAGTCTACACCAGCGGCATTAGTGTGACAATGCTTAACGTTCTCCTTGGTGAGGAGAGAAGAGTCCCCTATGCACCCTGCATGATACAGTGCTTCTTATTTCATTTTGGAAGTTCTATGGAACCCTTCGCAATTGCTCTGATGGCTTATGATCGCCTTATTGCAATTTCATATCCTCTTCGATATCAGACTATCTTAACTAATACAAATGTATGTTTACTTATAATAGCCAATTGGGCACTAGGCTGCATGTTTGCCAGTTTGTTGACTGGCTTGGTGAACAATCTGCCCTTCTGTGGCTCAAATAAACTCCCATACAGCTTTTGTGAATATGCTAACTTAATAAGAGCATCATGCGTGAATCTTTCACATTATTTCAATGCAATTTCTGCTTTGGGGACTGCTGTATTATGGGTTACTTTAGCCTTGATAATCATCTCATACATGAAGATAGTTTATGTAGTGATACAAATGTCTTCATCCAAAGACAGGAGGAAAACATTTAACACCTGTGTCTCCCACATGATAGTGGTGGCTTGCTTCTTTATCCCCAAGGTGTTGATAATATTGGTCACCAGGACCCTTGACTACATTATTGTTGCAGTTCTTAAGATTGCCAGCACCAAAGGCTGCCTCAAAACCCTTTCTATCTGCAATGGCCAGCTGATCATCATTGCCCTCTATATTCTACCTAGAATTTGTATTTATCTGTCCAGTAATACCGGCATTAGATTCAGCACTGATTTACATATTGTTATTATCATGTTGTATAGCCTGCTCCCTCCTATGATCAATCTACTGATATACTGTTTCAAGACAAAAGATATGAAACAGAGCTTGATGAAAAGATTCAAAAGATGAACTGGTCCACAGAAAGAGAGTCTCTGCTGTATCTTAATGATTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2375096 lncRNA upstream 45928 34887840 ~ 34888115 (+) True G2077326
TU2375072 lncRNA upstream 89232 34844582 ~ 34844811 (+) True G2077302
TU2374988 lncRNA upstream 170694 34762986 ~ 34763349 (+) True G2077237
TU2374984 lncRNA upstream 172916 34760832 ~ 34761127 (+) True G2077233
TU2373767 lncRNA upstream 185273 34748401 ~ 34748770 (+) True G2076124
TU2375137 lncRNA downstream 23109 34959214 ~ 34959472 (+) True G2077364
TU2375266 lncRNA downstream 76674 35012779 ~ 35013101 (+) True G2077480
TU2375272 lncRNA downstream 82430 35018535 ~ 35019135 (+) True G2077486
TU2375268 lncRNA downstream 175677 35111782 ~ 35112897 (+) True G2077482
TU2375331 lncRNA downstream 199509 35135614 ~ 35136315 (+) True G2077542
XM_036965032.1 mRNA upstream 6273 34926709 ~ 34927770 (+) True LOC118944681
XM_021587098.2 mRNA upstream 14839 34918007 ~ 34919204 (+) True LOC110507207
XM_036965031.1 mRNA upstream 20521 34912417 ~ 34913522 (+) True LOC110507206
LOC110507203 mRNA upstream 54278 34878519 ~ 34879765 (+) True LOC110507203
LOC110507201 mRNA upstream 69300 34863743 ~ 34864743 (+) True LOC110507201
XM_036965034.1 mRNA downstream 5149 34941254 ~ 34942207 (+) True LOC110507209
NM_001124239.2 mRNA downstream 17042 34953147 ~ 34954134 (+) True rtor1
XM_036965014.1 mRNA downstream 34415 34970520 ~ 35009804 (+) True cwf19l2
XM_036965275.1 mRNA downstream 78526 35014631 ~ 35111042 (+) False gucy1a2
XM_021588401.2 mRNA downstream 219901 35156006 ~ 35164459 (+) True LOC110507973
TU2373744 other upstream 219487 34712576 ~ 34714556 (+) True G2076102
TU2373636 other upstream 431338 34502249 ~ 34502705 (+) True G2076000
TU2373037 other upstream 999142 33916748 ~ 33934901 (+) False robo1
TU2373344 other upstream 1034420 33899277 ~ 33899623 (+) True G2075724
TU2373306 other upstream 1116055 33817532 ~ 33817988 (+) True G2075687
TU2375270 other downstream 79074 35015179 ~ 35030337 (+) True gucy1a2
TU2375336 other downstream 210039 35146144 ~ 35146669 (+) True G2077547
TU2375598 other downstream 529885 35465990 ~ 35507974 (+) True LOC110507975
TU2375601 other downstream 534225 35470330 ~ 35513513 (+) True G2077777
TU2375966 other downstream 748030 35684135 ~ 35692833 (+) True G2078087

Expression Profile