G2078509


Basic Information

Item Value
gene id G2078509
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36295326 ~ 36296020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2376472
ACTGGCACCAGGAGTGGTTGAGTTTGCTTTGACTCCATTAGAATACATAGAGGATTTAAAGTTTAAATGATTgcacaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagggtagTGAAAGTGATAACAGACATCAGGTTGTTTGTTGTACAGCATCTCTCTGTAGTCCAGAGCTAACTACTAATTCCCATACAGTCCCTTACAGAGTGGCAAAGGGTTGTCCCTAGGCCCCGAGGCCCTGATGCCCCACACAGAAAGGGTAACCCCATCCCAAATCAACCCCTCGGCCCTACCCCATGGCACTTCTCCACCATTCAAAAGGGCTGCGTTTGTGTGAGGCAAGCAATATGGCAGTGTTTTCTCAAAATGGTGGCTTACAACCAGGTCTTCTTGGTTTGTGAACAAGTCCCAGTTGCCCGCTGATGACGTCACTCAACACCAGTGAGTGTGAGATGCTTCTCTCTGATGGAAGGAGAACCAGTGAGTCACTTCATGGTAGGTTCAAGTCACCTGTCTCAATGTGAGcctggggtcAGGGGTCACGGTGAGGGGGAGCTGGTCTCAGCTGAAGGACTCTTTGTTGAACTCAAACGTGGTTCCTGAATAGCGGTCTGAGTTACACAGTCTGTGCAGAGTCCTGGAGATGCCTTTAGGCCCACAGCAGAAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2376472 True 675 lncRNA 0.50 2 36295326 36296020

Neighbor

gene id symbol gene type direction distance location
LOC110507977 fzd4 coding upstream 282992 36005425 ~ 36012334 (+)
LOC110507976 LOC106581370 coding upstream 472442 35804534 ~ 35822884 (+)
LOC110507975 LOC106581363 coding upstream 776217 35465699 ~ 35519109 (+)
LOC110507973 LOC106581395 coding upstream 1130867 35156006 ~ 35164459 (+)
gucy1a2 LOC106581392 coding upstream 1184284 35014631 ~ 35111042 (+)
naalad2 LOC106581411 coding downstream 69635 36365655 ~ 36381011 (+)
LOC110508005 LOC106613226 coding downstream 142205 36438225 ~ 36440709 (+)
LOC110507218 LOC106591049 coding downstream 157741 36453761 ~ 36546497 (+)
LOC118944683 NA coding downstream 314715 36610735 ~ 36618726 (+)
LOC118936607 LOC106581404 coding downstream 382753 36678773 ~ 36703523 (+)
G2078461 NA non-coding upstream 115308 36179131 ~ 36180018 (+)
G2078456 LOC106581415 non-coding upstream 126830 36165327 ~ 36168496 (+)
G2078451 NA non-coding upstream 135477 36159552 ~ 36159849 (+)
G2078447 NA non-coding upstream 142198 36152817 ~ 36153128 (+)
G2078444 LOC106581415 non-coding upstream 143792 36142375 ~ 36151534 (+)
G2078515 NA non-coding downstream 8533 36304553 ~ 36305222 (+)
G2078529 NA non-coding downstream 55303 36351323 ~ 36351646 (+)
G2078530 NA non-coding downstream 56700 36352720 ~ 36353940 (+)
G2078544 NA non-coding downstream 95370 36391390 ~ 36392076 (+)
G2078548 LOC106581410 non-coding downstream 111984 36408004 ~ 36411380 (+)
G2078425 NA other upstream 191225 36102874 ~ 36104101 (+)
G2078382 NA other upstream 261327 36033285 ~ 36033999 (+)
G2078296 NA other upstream 362817 35932115 ~ 35932509 (+)
G2078253 NA other upstream 423593 35870485 ~ 35871733 (+)
G2078188 NA other upstream 497336 35797572 ~ 35797990 (+)
G2078493 NA other downstream 4918 36263506 ~ 36302664 (+)
LOC110536894 NA other downstream 977466 37031161 ~ 37276857 (+)
G2079197 NA other downstream 983085 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 1070719 37366739 ~ 37368136 (+)

Expression


Co-expression Network