LOC110507223 (LOC106613251)


Basic Information

Item Value
gene id LOC110507223
gene name LOC106613251
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 39781189 ~ 39938079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965017.1
TAAGTGAGGAGAAAACGTCTCGTGGGACCGCGGGTGAAGTCTATACGTTTAGTCGGTTTTTAACGGATTTTAAAAGGCTTCTTTCTTTCCCCCACAAAACTGACTGACTTCTACAGAATAAAGGgagTCTGATGTGTAGCAGACACCATGCATCAGCTGTTAGGCCTGGTGCTGGGCAAGAGGGACCTGTCCCGGGCTGGAGACCTCTTCTCCCTGGAGGACTCTGAGATAGAGGACTGTCTCTCACAGGCCCTGGAGGAAATCAAGGCTATCTCCTGCTCCCCTGACTACCTGACCAATGACAATGACCAGGCTGTGGTGGAGATCTGCATCACGCGTATCACCACAGCAATCAGGGAGACACGGTCCATCGAGCGCCATGGGGGGGCACTGGTGGGTCTGTGGGAGTCCTGTCTGGAACACAACCTCACCCCCCAGGGTAAAGACGAAGACACACCCCATGCCAAGATAGCCTCTGACATCACCAGCTGTATTCTGCAgaACTACAGTCGTCCCCCAGTGATGGCTCTAGCAGTGCCGGTGGCAGTGAGGTTTCTGCAGAGAGGCAACAGAGAGCTCAGTAGAAACATGTCCAgttatctctctctggctgccATGGCTAAGGCTGAACTACTGGCAGAACACACAGAGGCTATCACCTGCAGCGTGCTGggagGTAACCACATGCTCCTACGCGTGCTGCCGTCCGTCTACCCCAAACAGCCCCATGCCATCCATCGTCACCTAGGCAACCTGACGGCCATGATGTCACATCTCGATTCACCGGAGCAACAACACCTGCTGAGGCTGATCCGGATGGTCGCCGAGCAACagccactggtTCTGAGCCCCCTGGTGCCCTCCCTGGTTGGTTACCTAGGCGATGCATCTCTGAACGAGACTCTACTGGGTGCACTGGTGGACATGTCACAGGCTAGCCCCGCCTCCATGACCCCCTTCCTGCCCGCGTTGAGGGTTGTGGGTCAGCAGTACCCAGTCCTGCTGGGAGACGTGGTCAAAATACACAGAGCTGTGGGCTTGACCAGTGAGcgtCAGGCCCGTAGCTCCCTGGCGTACCTAGTGTCTCTGCTGGGCAGTATGGATCACAGCTTCCACTACAGTCTGCTGCTGGAGATCAGAGCCCTGACTGACAGATACACCTCCATCCTGGGAGGCTGTGCCAAAGACATCTACAGGATGAGTAACAGCTTCACCTCTATAGCCAGACTACTGGAGACATACACCACCATCAACTGCAGgGTTGAAGAGGAATCAGAAGGCCCTCCTTCCCCagaggccagtgtgtgtgtgggtgcaggGGGGTTTGGAAGGGGGTCAGAGCAGCGACTGCAGGTGAAGATCCAGGCGTTTGAGGAGAAGATGGGGGatgaggggggagaaggggagacagaCGGTGGGTCAACTACACCCCAACGCAGATACAGCATGGGACAAGCCGCtagagaggaatacagagagatgAGATTTAACAGGTCAAAGAGTCTGGCTCTGCACGCTGTGAGGTCACGGTCCATCAACTCTGAGAGTGGTCAGGATGGAGAAGGGGTGGAGCTAACATCTGACGCATTGCTCTCAGTGTCCCCACCCAATCAGCAAACGGAAAACTTAGACACCTCTCCCACTGAGAGGGAGCTAACCAATGTGAgttccctgtctccctccacccATCCGGCCACGCCCCGTGAGGAACAGAGGgatggacagggagagggggaaggaaggagaggagtgaATAGGGACACCGGGAAAGAGGACAAGCTGTACAGCCACCTGAGGGACAACATGGAGAAGATCAAAGAGTTCTGTTCTGTGATGGTCCAACAGATCCCCATACCAGAACACTGTGTCATAGAAGACTCAAGCCGTGGCTGTGTTGCAAAGCTGTCGTTCTCGTGCTCTCTAAAGGGGCATTACTGTCTGTATACCAAGTCCTGTTTCACCCTCACCAGCCTCCAGCCACACCTCTGGATCAACATCATGCTGCTTCACCTACAGAGTCAGCAcagctctcccctctcctctctggatGACTGTGTTCAGAGGTTGGGGAGACTGTGGGAGAGGACCCAGCTAAAAGGAGCTCACTGCTTCTCCATGGCCATGACACAACAGCCCACTCCACACagaaaggacctGGACAGTCTGCAGATCCTTCTGGAGGAGGTGCGTTTCTTTGACCTGTTTGGCTTCAGTGAAGAGGAGGGCAGCTGGCTCTGCTACATGTGCAACAACCCAGAGAAGGCCACAGTGGTGAACGAGGATGGCCAGCCGCTGATAGAGGGGAAACTGAAAGAGAAGCAGGTTCGCTGGAAGTTCATCAAACGCTGGAAGACTCGCTACTTCACCCTGGCAGGAAACCAGCTCCTCTTCCGGAAGGGAAAATCTAAGGATGAGCTAGACGACAGCACCATCGAGCTGAGCAAAGTGCAGAGCGTCAAGgtgGTGGCTAAGAAGCGACGTGAGCGGGGTCTCCCTCGGGCCTTTGAGATCTTCACGGACAGTAAAACATACGTCCTGAAGGCTCGTGATGAGAAGCATGCTGAGGAGTGGCTCCAGTGTATTAATGTTGCCGTGGcccaggccagagagagagagaacagagaggccaCCACCTACCTGTGACCTTGTGACCTGGAAGATATTCTACTGTGACCCGTTCCTGACCCAGAAACACAACATACAGCCCCGCACTACTGTACCATCTACTAACAACAGCTGTGATGTCAACTGTTTCTGGTCATCTGACAGCTGTGGGGTAGCGAAGACTGATATCCTGACATCATTACCAGAATTTAGTCAAACACTTATATAGGGTATTGTTTCAGTATTTACAGCAATAAGGATCTTACTAGCAAGCAATATGGACCTTCTATTTCCAGCAATAACAATCTACATAGTAAACCTAGCAATAAGAGCTCAATATGAACAGCATGAGAAAACTAAGATGAAAACCCCCTAATAGATAGCATATGAGAGCGTTCTACAGCAAACAAACAGATTTACTGTTATTAGCATTTAGCAGTATAATGTATTAATAAATCGTCATTTAGCAGTATAATTTATTAATATACCGTCATTTAGCAGTATAATGTATTAATATACTGTCATTTAGCAGTATAATGTATTAATAAATCGTCATTTAGCAGTATAATGTATTAATAAATCGTCATTTAGCAGTATAATGTATTAATAAATCGTCATTTAGCAGTATAATTTATTAATAAACCGTCATTTAGCAGTATAATTTATTAATAAACCGTCATTTAGCAGTATAATGTATTAATATACCGTCATTTAAAAAGGACCCAGTGGTGTAATATAGTGAGCTACAAAAgtaatgagaaagttacagacgcaccaATATCATACCTTCAAGAGGTATGCTAACCTTTCAcccttacaataacaggggaaaTTAGCATTTTTCGGCGGGGGTATGACATTTGTGCATCtgtgattcattcaggattatccgtaatcatggtcacatccacattaatgtagatgtgtttagaaaacatattatattattatttacaataaaagtgactccaaaatgacacaatacctGATTTATCagtcatttctattgggcacaaaagaatctgaaacacaaccaaaactaaCAGAAAATGAAGTCAGTCACAAGCTTGTTGGGACCAAATGcttaactttttactactttactactttctaaacggttcatccgatatggatgaaaataccctcaattGAAAGCTGACAACCTGCACGTTAatctcatagtcattgtatcatttcaaatccaaagtgccgGAGTACAGAGCCGAAAATGCGTCACTGTCCCAATACGTTTGGAGCTCATTGTATGTCATAGTTCATAAATGAACAGACTAGTCCTCTGGAGGTCTTAGCAGAGGCTCAGAACAACAGTGGGTGATATGGACCACACTGCTGGGGGCTTTATAACTACGTTTTCCCGATAGGACACGCTCTTCTATGGAGAAACATGTTTATTGGCAAAGCTATCATCTTTTTATTCTCTTGCCTTTTGTTTCAAGAAAAtagttgtttgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaatgatGAGCATTGTTGACATTTCTGACTTGTCCATTAATAACTATACATTAAACCTATTGTTTGCAGAACTCTCTCTCATCACACTGGAGTCTACtatccctcccctaattggagtaactagtgaacaacaactcttaggcttctacttccagcttata
>TU2380477
agACTCAAGCCGTGGCTGTGTTGCAAAGCTGTCGTTCTCGTGCTCTCTAAAGGGGCATTACTGTCTGTATACCAAGTCCTGTTTCACCCTCACCAGCCTCCAGCCACACCTCTGGATCAACATCATGCTGCTTCACCTACAGAGTCAGCAcagctctcccctctcctctctggatGACTGTGTTCAGAGGTTGGGGAGACTGTGGGAGAGGACCCAGCTAAAAGGAGCTCACTGCTTCTCCATGGCCATGACACAACAGCCCACTCCACACagaaaggacctGGACAGTCTGCAGATCCTTCTGGAGGAGGTGCGTTTCTTTGACCTGTTTGGCTTCAGTGAAGAGGAGGGCAGCTGGCTCTGCTACATGTGCAACAACCCAGAGAAGGCCACAGGGCCACCTTACCGAGTGACGGATCACTCCCAGGACACACACCATATG
>TU2380474
aaagttacagacgcaccaATATCATACCTTCAAGAGGTATGCTAACCTTTCAcccttacaataacaggggaaaTTAGCATTTTTCGGCGGGGGTATGACATTTGTGCATCtgtgattcattcaggattatccgtaatcatggtcacatccacattaatgtagatgtgtttagaaaacatattatattattatttacaataaaagtgactccaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965017.1 False 4362 mRNA 0.48 15 39781189 39938079
TU2380477 False 442 TUCP 0.55 4 39895667 39913078
TU2380474 True 214 lncRNA 0.35 1 39937081 39937294

Neighbor

gene id symbol gene type direction distance location
LOC110507222 LOC106581437 coding upstream 79977 39694561 ~ 39701212 (+)
LOC110508028 neus coding upstream 99629 39667989 ~ 39681560 (+)
LOC118944799 NA coding upstream 741564 39039573 ~ 39039625 (+)
LOC110508002 LOC106581401 coding upstream 1153019 38619550 ~ 38628170 (+)
LOC110507217 NA coding upstream 1306590 38469918 ~ 38474599 (+)
ssr3 LOC106581450 coding downstream 356752 40294831 ~ 40297552 (+)
LOC110508037 LOC106581457 coding downstream 723167 40661246 ~ 40670079 (+)
LOC118944712 NA coding downstream 728938 40667017 ~ 40668632 (+)
LOC110507225 LOC106581476 coding downstream 754324 40692403 ~ 40840064 (+)
LOC110508042 LOC106613262 coding downstream 902627 40840706 ~ 40847141 (+)
G2081813 NA non-coding upstream 53164 39725918 ~ 39728025 (+)
G2081800 NA non-coding upstream 71433 39709441 ~ 39709756 (+)
G2081797 NA non-coding upstream 77205 39703459 ~ 39703984 (+)
G2081796 NA non-coding upstream 79434 39701470 ~ 39701755 (+)
G2081792 NA non-coding upstream 87683 39682685 ~ 39693506 (+)
G2081950 NA non-coding downstream 1995 39940074 ~ 39940355 (+)
G2082145 NA non-coding downstream 7525 39945604 ~ 39945812 (+)
G2082147 NA non-coding downstream 7773 39945852 ~ 39946484 (+)
G2082163 NA non-coding downstream 20785 39958864 ~ 39959203 (+)
G2082164 NA non-coding downstream 22096 39960175 ~ 39960409 (+)
G2080014 NA other upstream 1836038 37944932 ~ 37945151 (+)
G2079657 NA other upstream 1961903 37815848 ~ 37819286 (+)
G2079468 LOC106581367 other upstream 2413053 37366739 ~ 37368136 (+)
G2079197 NA other upstream 2500357 37279105 ~ 37280832 (+)
LOC110536894 NA other upstream 2504332 37031161 ~ 37276857 (+)
G2082162 NA other downstream 19136 39957215 ~ 39957751 (+)
G2083005 NA other downstream 1043291 40981370 ~ 40984854 (+)
G2083239 NA other downstream 1274125 41212204 ~ 41212772 (+)
LOC110507232 LOC106593204 other downstream 1568280 41485189 ~ 41507173 (+)
G2081943 NA non-coding upstream 13364 39923502 ~ 39923717 (+)
G2081942 NA non-coding upstream 15031 39921825 ~ 39922050 (+)
G2081926 NA non-coding upstream 49528 39886726 ~ 39887553 (+)
G2081909 NA non-coding upstream 74428 39858460 ~ 39862653 (+)
G2081845 NA non-coding upstream 114560 39776162 ~ 39822521 (+)
G2081949 NA other upstream 3246 39931874 ~ 39933835 (+)
LOC110507223 LOC106613251 other upstream 24003 39781189 ~ 39938079 (+)
G2081884 LOC106581433 other upstream 99698 39827658 ~ 39837383 (+)

Expression


Co-expression Network