G2081792


Basic Information

Item Value
gene id G2081792
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 39682685 ~ 39693506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2380380
ctgttaatacaggactagtaaaggcctgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaatacaggactagtaaaggtgtgttaatacaggactagtaaaggtgtgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgctaatacaggactagtaaaggcctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtatgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgctaatacaggactagtaatacaggactagtaaaggtatgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggac
>TU2380382
atacaggactagtaatacaggactagtaatacaggactagtaatacaggactagtaaaggtatgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtctgttattacaggactagtcatacaggactagtaaaggtatgttaatacaggactagtaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggcctgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggcctgttaatacaggactagtaatacaggactagtaaaggtatgttaatacaggactagtaaaggtatgttaatacaggactagtaaaggtatgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgctaatacaggactagtaaaggcctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtatgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgctaatacaggactagtaatacaggactagtaaaggtatgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggac
>TU2380386
gactagtaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtatgttaatacaggactagtaaaggtatgttaatacaggactagtaaaggtttgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaggGTCTGTTAATaaaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagaaatacaggactagtaatacaggactagtaaaggtctgttattacaggactagtaa
>TU2380384
aggactagtaaaggtctgtaaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaatacaggactagtaaaggtctgtaaaTACAGGActtgtaaaggtctgttaatacaggactagtaaaggtctgtaaatacaggactagtaaaggtctattaatacaggactagtaatacaggactagtaaaggtctgttaacacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtatgttaatacaggactagtaaaggtttgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtatgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactattaatacaggactagtaaaggtctgttaatacaggactagtaaaggtatgttaatacaggactagtaaaggtctgtcaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaagACTAGTAATAcaggcctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggactagtaaaggtatgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgttaatacaggactagtaaaggtctgctaatacaggactagtaatacaggactagtaaaggtatgttaatacaggactagtaaaggtctgttaatacaggactagtaatacaggac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106563894 isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2380380 False 666 lncRNA 0.36 4 39682685 39693506
TU2380382 False 1022 lncRNA 0.36 3 39683858 39693506
TU2380386 False 332 lncRNA 0.35 2 39685894 39688558
TU2380384 True 1199 lncRNA 0.36 3 39688058 39693506

Neighbor

gene id symbol gene type direction distance location
LOC110508028 neus coding upstream 1125 39667989 ~ 39681560 (+)
LOC118944799 NA coding upstream 643060 39039573 ~ 39039625 (+)
LOC110508002 LOC106581401 coding upstream 1054515 38619550 ~ 38628170 (+)
LOC110507217 NA coding upstream 1208086 38469918 ~ 38474599 (+)
LOC110508017 NA coding upstream 1622572 38052633 ~ 38060113 (+)
LOC110507222 LOC106581437 coding downstream 1055 39694561 ~ 39701212 (+)
LOC110507223 LOC106613251 coding downstream 87683 39781189 ~ 39938079 (+)
ssr3 LOC106581450 coding downstream 601325 40294831 ~ 40297552 (+)
LOC110508037 LOC106581457 coding downstream 967740 40661246 ~ 40670079 (+)
LOC118944712 NA coding downstream 973511 40667017 ~ 40668632 (+)
G2081783 NA non-coding upstream 25542 39656847 ~ 39657143 (+)
G2081782 NA non-coding upstream 26308 39656178 ~ 39656377 (+)
G2081781 NA non-coding upstream 28181 39653485 ~ 39654504 (+)
G2081772 NA non-coding upstream 43559 39638775 ~ 39639126 (+)
G2081771 NA non-coding upstream 44410 39638006 ~ 39638275 (+)
G2081796 NA non-coding downstream 7964 39701470 ~ 39701755 (+)
G2081797 NA non-coding downstream 9953 39703459 ~ 39703984 (+)
G2081800 NA non-coding downstream 15935 39709441 ~ 39709756 (+)
G2081813 NA non-coding downstream 32412 39725918 ~ 39728025 (+)
G2081845 NA non-coding downstream 82656 39776162 ~ 39822521 (+)
G2080014 NA other upstream 1737534 37944932 ~ 37945151 (+)
G2079657 NA other upstream 1863399 37815848 ~ 37819286 (+)
G2079468 LOC106581367 other upstream 2314549 37366739 ~ 37368136 (+)
G2079197 NA other upstream 2401853 37279105 ~ 37280832 (+)
LOC110536894 NA other upstream 2405828 37031161 ~ 37276857 (+)
G2081884 LOC106581433 other downstream 134152 39827658 ~ 39837383 (+)
G2081949 NA other downstream 238368 39931874 ~ 39933835 (+)
G2082162 NA other downstream 263709 39957215 ~ 39957751 (+)
LOC110508042 LOC106613262 other downstream 1150008 40840706 ~ 40847141 (+)

Expression


Co-expression Network