G2081884 (LOC106581433)


Basic Information

Item Value
gene id G2081884
gene name LOC106581433
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 39827658 ~ 39837383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2380510
atacacacacacacacacacacacactgCTTCTCTAAATGGGAAACACTCCTCTAACAGGGCACATTCTTCTCCAGTCTCTTTAGCCATTAAAGAGAGCTGGTGTTGTTGTTCATGTTCACATTGTTGTTGCAGTCTCAGCCGGTCGGGCTGTTCTGCACTGCAGGTCTTAGGGCAGCATAATTAGTTTATAATGGTGACGACGAAGATGATGATAGTTAATTTAAATGATGATTTACATGATGAAAACGATGGTTCATTtaaatgatgatgattatgatgatgaaaatgactgttcatttaaatgatgatgattatgatgaagATGTAGAGTTGATTTAAACGATGAAATGATAGTTCATTTAAATGATGAGGATTAGGATGAAGATGATGAGGAttatgatgaagatgatgaggaTTATGATGATGAAGCTGATAGAGTTGATTtaaacgatgatgatgatgaaaacGTCATCAGAGTTAGTTGATGAACTGAGCACCCCCGTGAGGCACAATCTCCGTCAAGCCCCACCCAACTACATTCCCCCTCTGCTCACACCCCTCACCGTCTTGCAAAGCCAGCTGGGATATCTCCTCCTCCGTCAGCACACGGTCCCACATGTTCACCCCTGTCATCTTCCCAGCGAATGCCAACTTGGCATCGAAGCCTCCCTCAAACCCAGGCATCTGACTCCCACTGCCACCTGACCCTCCAGAGACCCCACCGTCGTTCTTCTCCTGCCCCAGCTGGAGTGAGCCTCCATCCGGTAACATGTGGCCCTCGGCCACCCCGGGTGTGTATGCCACTCTGTGTCCATCGGCCCATAGTGACGCTATGCCCTGCTCAGAGCTCCAAGCCCCACATAGGTGGGTCCAAACTCCTCCTCCTTTCACCACTCCCCGTGCCTCCACCAGGTGAGCCTCTCCTCCCACGGTGAAGAGAGCCCTTGTTCCGCTAAGAAGGAGCTGTATCTCATAGGGGTTCCGTTTGGTTCCGTAGGAAAACAGCACAGTTCTGTTGGAGACGGAGACGGGCTTGGCCCACAGGCACACggtgaaggaagagagggagagagggaggtctgGTGTCACTGACGAGAAGATGCGACGGGAACGCATAGGGAAGAGAAGAGCGGTCTCACA

Function

NR:

description
pentraxin-related protein PTX3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2380510 True 1142 TUCP 0.49 2 39827658 39837383

Neighbor

gene id symbol gene type direction distance location
LOC110507222 LOC106581437 coding upstream 126446 39694561 ~ 39701212 (+)
LOC110508028 neus coding upstream 146098 39667989 ~ 39681560 (+)
LOC118944799 NA coding upstream 788033 39039573 ~ 39039625 (+)
LOC110508002 LOC106581401 coding upstream 1199488 38619550 ~ 38628170 (+)
LOC110507217 NA coding upstream 1353059 38469918 ~ 38474599 (+)
ssr3 LOC106581450 coding downstream 457448 40294831 ~ 40297552 (+)
LOC110508037 LOC106581457 coding downstream 823863 40661246 ~ 40670079 (+)
LOC118944712 NA coding downstream 829634 40667017 ~ 40668632 (+)
LOC110507225 LOC106581476 coding downstream 855020 40692403 ~ 40840064 (+)
LOC110508042 LOC106613262 coding downstream 1003323 40840706 ~ 40847141 (+)
G2081845 NA non-coding upstream 5137 39776162 ~ 39822521 (+)
G2081813 NA non-coding upstream 99633 39725918 ~ 39728025 (+)
G2081800 NA non-coding upstream 117902 39709441 ~ 39709756 (+)
G2081797 NA non-coding upstream 123674 39703459 ~ 39703984 (+)
G2081796 NA non-coding upstream 125903 39701470 ~ 39701755 (+)
G2081909 NA non-coding downstream 21077 39858460 ~ 39862653 (+)
G2081926 NA non-coding downstream 49343 39886726 ~ 39887553 (+)
G2081942 NA non-coding downstream 84442 39921825 ~ 39922050 (+)
G2081943 NA non-coding downstream 86119 39923502 ~ 39923717 (+)
LOC110507223 LOC106613251 non-coding downstream 99698 39781189 ~ 39938079 (+)
G2080014 NA other upstream 1882507 37944932 ~ 37945151 (+)
G2079657 NA other upstream 2008372 37815848 ~ 37819286 (+)
G2079468 LOC106581367 other upstream 2459522 37366739 ~ 37368136 (+)
G2079197 NA other upstream 2546826 37279105 ~ 37280832 (+)
LOC110536894 NA other upstream 2550801 37031161 ~ 37276857 (+)
G2081949 NA other downstream 94491 39931874 ~ 39933835 (+)
G2082162 NA other downstream 119832 39957215 ~ 39957751 (+)
G2083005 NA other downstream 1143987 40981370 ~ 40984854 (+)

Expression


Co-expression Network