LOC110508566 (LOC106599903)


Basic Information

Item Value
gene id LOC110508566
gene name LOC106599903
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 12422287 ~ 12502712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589160.2
gtaggagagagatagaagcGCTCGAGCACTTGGAGTCACTTCTGAGTGCACTAGTTGGACGAGACGTTTTCCATGGGTTTGAAAGGGCACACTCTTTCTTTCCGTTATAGCTTGGATGAAACACATGCACATACTGTAGTGGGCTTCGTGTAGGGAACCTCTTGGACTTCAATCCCAGTTTAAAATTATTTGATTTAACGTATCAATTAACCATGGATGCTACCATTTACCAAATCATCTTTGGGGAGTTTGGAGACCCAAACTGCAGTGTGATGGATTCATTTCAAGACAGTTTCTATGAAAACGCATCGTTCTCTTTGATGGATTTTGACGGTTTGTATTGCAATGCCACAACGGATGAGATTGGAACATGTTGGCCAAAGAGCAACACCGGACGGATGGTGGAGAGACCCTGTCCAGAGTACATCAATGGGGTGAAGTACAACACAACAAGGAGCGCATACAGAGAATGCATCGATAATGGAACGTGGGCTCTGAAGAGCAACTACTCCAGTTGTGAACCTATTTTGGAGGAGAAGAGGAAATACCCAATGCACTATAAGATTGCTCTGATCATCAACTACCTAGGCCACTGTATTTCTGTGGGAGCTCTTGTCGTGGCCTTCGTTCTCTTCTTATGCTTAAGGAGCATAAGATGCCTTCGAAACATAATCCACTGGAACTTGATAACAACCTTCATTTTGAGGAATGTTATGTGGTTCCTACTTCAGTTGATTGACCACAATGTGCATGAGAGTAATGAGCCTTGGTGTCGCCTTATAACAACGATATATAACTATTTTGTGGTGACCAATTTTTTCTGGATGTTTGTTGAAGGATGCtaccttcacacagccattgtGATGACTTATTCTACAGACAAGCTAAAAAAATGGGTCTTCTTGTTCATTGGCTGGTGCATTCCATGTCCTATTATTGTTGCTTGGGCCATTGGGAAGCTTTATAATGAAAATGAACAATGCTGGTTTGGGAAAGAACCTGGAAAGTATATTGACTACATTTATCAAGGGCCGGTCATCCTTGTGCTTTTGATAAACTTCGTTTTCCTCTTCAACATAGTAAGAATCCTTATGACCAAGTTGAGAGCTTCTACCACATCAGAAACTATACAGTACAGAAAAGCAGTAAAAGCGACATTAGTGCTACTGCCTCTGCTGGGTATCACCTACATGCTGTTTTTTGTGAATCCCGGAGAGGATGACATCTCgcaaatagtttttatttatttcaattcattTCTACAATCATTTCAGGGGTTCTTTGTCTCAGTATTCTACTGCTTTCTTAATGGCGAGGTGCGCTCAGCAGCCAGGAAAAGATGGCATCGTTGGCAGGACAACCATGCCCTGAGAGTGCGCGTGGCACGTGCCATGTCCCTCCCCACCTCACCCACCAGGATCAGCTTCCATAGTATAAAACAGACCACAGCCGTTTGACCAAATCCAAAGGTCCCCTTtggaaatgtcattttttttctaGGGAAGAGACTTGTCTTGAAGCACCTCTCCATAAATGTTGTCTATTTCCTGTATTTCTTACCCCAGCTGCATAAGGACAGATACAGAGGGCTTTGAGGAAGAGACTATTAGGATTTCCGAAATTACAGTACTGTAACACAACCTCCTTGGACGTGTGGCAGAGATGTAAATTCAGAACAGATGGGCAATGCCGCCTCTCCAAATGAACTTTGTGAAGTGATTGCAGAGTCAGAGTCTTACTGGCAATGCATTAATAGATGTTTTCATACTGTATTACACCAGGTTGGATTTTAATAGGTCAGGAATGTCGACCTGTCAAGGACCAATCCTGACGAGGCAAAAAAAAAAGCCACGTTAATGTCAAAAGAGACCCTAATCACTCTCAGTACTCTACTATACTTGTAGCAGCATTTATTTCTATAACCTTTCATTGTTTCATGTCTATGAGAGGGCAGGGATAAGCAGGAATGTGCATAAACAGAGCAGACACGGGATGAAAATGCGTTCTGTGTCTGTTGCAGGCTGAGCTCGAGATGCAATGAGAGCGATCAAATGATACTGTTAATCACCAAGGTAATAAGGAACGTGCAGACTCCAAGTGATATCGTTCGGTTTGTCGTCAGCACCACTTTTTTTGCGTCGTCAAAATGTCACCCTAAGAGCTATTCTATTGTATAAATGTTTTCAGGCTCatttattttaagattgttccCTGCCAATCATTCTCAAACGCCTTTGAGCAGTACAACATCAATGATCTGTTTTTCTCTCTTCTGTAGAAAAAACCCTAAGGCAGCTCTTATTTGGATGAGTAATCATAAATCAAAGCTATCTTTCACTGGGTTTGAGTTCAGATTATATCCATTATCTTATTATGTAAATAATGGAGATGGGACTGTGATTCTGAGACTTTTACATAACACTTATTTAAACACTGAACAGACCCTGACTTCAGTCCACGCAATGACACAGCTGTCCCAAGTCAAGAGAAATAGGAGTAATTTAAAGGTACAGTACATTGTGGATACATGAAATCCTTTTCACATAGTTATTTTCTCTCTTTCAAATCCCAATGTGCCATACTTAATCAGTGTCAGTACTAAACTGTTGGGTCgaggagccagagagagatagagcctGATTAGTGAGATCTTCATTTGGCTTCCTTAATGCTTTGCTCTGTTCAGGTCAACATGCCAAGCTCTGCCCTGGTGACTGACCGACAGGCTGACCTGCATGGGTGTTATCCTCATCTCCCTCCAGGCCCCCCCTGCAGTATAATACAATTTCCAGACACATAGGCATGCCTTTTTATTCAGGAAAATAGAACAGTAGAACCCATGCACCCAGGGAATTAAGTTCTTAAAATGTGGAATTGTAGAAATTATGCAATTAGATGGGTATTGAGTACAAGCTCACTGATCTGGGGTATTTGTTTAATGCATTGTATAAATCTATTTAGGTTTATAAGCAACCATGTACCTCACAGTTGAGTTACTTTGAGAGTATACAGCTCTCCCAAGttgtgcagcggtctaaggcactgcatcgcagtgcttgaagCATCACCACAGACCTGGGTTtggtcccaggctgtgtcacagctggccgtgaGTCAGAGGAAACATCACCCAGCTGGCGACCAatgtcagcttgcaggcacccactaacccggacgatactgggccaattgaggcggcacacaattgccTAGTGTTGTCCGGGATAGTGGAatgtttggctggcagggatttccttgtcccatcgtgctctagcgactccatgtggcaggccgggtgcctgcaagctgacatTGGTTGCCTGCAAGCTGACATTGGTTGCCAGCTGGATGATGTTTCCTCCGactcattggtgcagctggcttccaggttaagcgaacAGTGTGTCGAGAAGCGATCCGGCTTGacagggtcatgtttcggaggatgcatggctctcaaccttcgcctttcctgagtccgtaggggagttgcagcgattggACAAGACTGTAACCACCAAGAAGGGGTAAAAGTACAAAAAACTATACTTTGGGAGTGTATAGTAAGCAAGATGCTCAAATTAAAATATATAACATCTGTTGAGAGTTGCTGTTTTTAAATATAACGTAGGTACGGCTCAGTGACAGTCAGAATTAATTATTGCTTTACACATTTTCCTGGCATTGAAATTGGACTAGACCCACATTTATGTTGTAGAATAGCCAATTATATTTTAGCAAATTGCTTGTAATGAAAGATTTACTTCTGGAAGGTCAGTTATTTTTCTCCTCACCATTCAACAATTACTGTGAAAATAATGTGGTACCATAGAATAAATGATGAACCTGTCATGTCCATTAGAGTTTGCACCCCTTGATTGCTTTATGTATAATTTTCTGAAAGAGTTGGCTTTGTACCAGTTTCCTGTGTTACATTTTCATTAATGTGACTCACTCCATATGCGCAATTCCTCTCTTAAATACCATCAACTTTTCAAGCAAATAGCTTTCACGCAAACAGTCCCAAGATCTAAATAAATTGCCAATAAACTACTGTATGTGAAAAACTGTAAATATTTGAGCTCTTCTCTCGTCCTAAAACACTAAACCCTGTTGGTTGAACATCATTTTGTTATTTATGTTTGGGAGGTGCCTCCAAGTTGAATGTTTACATTGGAGCTGTTTTAATCATATCTAGCGGTTCTAGTTGAGAAGGTCTAAAAAATAAGATAAAATCTTCAAAGAGTGCGATAAAACATGTATAACAAAAGTGTTAAGCTGTACTGTACATAAACTATTTTAAAGTTTGTTGTATATTGTAATTAATACAGTATTTGTACACATTTTATgaagtaaatatgtttttttttctcttttactGTTAGTGACCGTAGTAATTCATTAAGAAAATTCTGAGCATTCAGGTTACATGAATACCTACAACCGTCCAAAGCAATCATAGAAAGGTATGAATATGTTATTTTACTTGTTTGTATCACCATCTCTCATTTTACAGTTTAAATTGTACTTTCCATGATGTGTTTAGTCTATTGAAGCCATCACAATTCTGGACATACAGCACTCCCATGAATGTTAGTAAAAGGTAAGCAGAGTTTTAAATTCACCAATGGAAATCCAACTAAAACTTGAGATTgaaactttattttttatttttcatgattaattcattcaaaatgtaatattCACCAAAGATGTGAAACGTGTTTACTTGTTGTCAGTGCACTTTTTCCAACCTTTTTCATACTTCTATTCACTTATGTCGGTTTGAATGAATGCCGTATTAATGTACATAATGCATTTTGGCTTTTTGTTGAAATACCAATGTTGCCTTATAGAAAAACATTGTGTAAAGAGCAAAAACTATGTTTCTACATTCATTGTTGTACTGATATGTGTGATTGATATGCATTTATACAAGTACATGTGGTAAAATCTTCAGATTTGAAATAAATATTCTCTCTGGTTTGTAAAGCTGCTACTAACAATCTTGTCCAGCATTTCCAGACTTAGTCAGACTCATTCAATAATCAGTATTCACTGAGGAGACAATGAGAAGGATTGCATTTTGTGCATTGCATTCATTCTATTTCATTATACCAGTGCTCAATTTGGATTAGAATCTCTTTGACCCAATAAGGGCTTAATAACGACTTAACATCTCTAACCACAGACTGCCATTAAAACTATTGAATATAATAAATATTTGAATGATGAAGGATGCTGGCTACACTGACTCCATGGCATGCTAACCTTACATGCAGATGCTAGACTCATTGGAGTATCTGAAGATGGCCTAAGGAAGAGTGCCATGTTAAATAATAGACTGTATATGTGGATTGGGTTTCCTACTATTCTTACTGTAGTTGGATGGAATGAGGTGTAGCAGCACTCTCACTGTACTCACTGTGAGTTATATAGCCCTAACAATTAGCTGCATCTCTGATTCAAGCAAATAAAGGCTTATTGTGACAATTAATGCTCCTGCTGCTTGACAGACGATTAAAAGGTGTTTTGTGGATCTGATGTGCCTCTCGGGCTATAGCTGCATATCCTCCTGGGTCCTCCTACAACTTGTAATATGTCCCTCAAGTTCCCTGTGACTATTTTCAGTCGCATTTCACCAATCATTAACTTGGCTAATAATAAATGATGTCATAACTGCATGGTGAGTAAAAtttttcacatactgtatgttatgaTTCCCGGTTTTGACAACTGCCTGACTCTGGACGACTTtcccgcctgcctgatcatcctgcctgcctgccctgaccttgaatctgccttcccttcggtacctattggactctgaaatggttttgaccttttgcctgtacaCAGCCATTCTCTTGTCTACCCCTTTTTGGATTAATAAaaattgtaagactccaaccatctgcctcctgtgtctg
>TU2407496
gggatttccttgtcccatcgtgctctagcgactccatgtggcaggccgggtgcctgcaagctgacatTGGTTGCCTGCAAGCTGACATTGGTTGCCAGCTGGATGATGTTTCCTCCGactcattggtgcagctggcttccaggttaagcgaacAGTGTGTCGAGAAGCGATCCGGCTTGacagggtcatgtttcggaggatgcatggctctcaaccttcgcctttcctgagtccgtaggggagttgcagcgattggACAAGACTGTAACCACCAAGAAGGGGTAAAAGTACAAAAAACTATACTTTGGGAGTGTATAGTAAGCAAGATGCTCAAATTAAAATATATAACATCTGTTGAGAGTTGCTGTTTTTAAATATAACGTAGGTACGGCTCAGTGACAGTCAGAATTAATTATTGCTTTACACATTTTCCTGGCATTGAAATTGGACTAGACCCACATTTATGTTGTAGAATAGCCAATTATATTTTAGCAAATTGCTTGTAATGAAAGATTTACTTCTGGAAGGTCAGTTATTTTTCTCCTCACCATTCAACAATTACTGTGAAAATAATGTGGTACCATAGAATAAATGATGAACCTGTCATGTCCATTAGAGTTTGCACCCCTTGATTGCTTTATGTATAATTTTCTGAAAGAGTTGGCTTTGTACCAGTTTCCTGTGTTACATTTTCATTAATGTGACTCACTCCATATGCGCAATTCCTCTCTTAAATACCATCAACTTTTCAAGCAAATAGCTTTCACGCAAACAGTCCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589160.2 False 5933 mRNA 0.40 12 12422287 12502712
TU2407496 True 780 lncRNA 0.42 1 12500026 12500805

Neighbor

gene id symbol gene type direction distance location
LOC110508562 LOC106600434 coding upstream 200452 12206077 ~ 12221835 (+)
rock1 LOC106600432 coding upstream 216725 12134658 ~ 12205562 (+)
LOC110508559 LOC106600430 coding upstream 402082 12000501 ~ 12020205 (+)
LOC110508558 NA coding upstream 464731 11950703 ~ 11957556 (+)
LOC118944888 LOC106600427 coding upstream 675987 11738275 ~ 11746300 (+)
pth1r LOC106599896 coding downstream 41827 12544539 ~ 12630837 (+)
LOC110508572 LOC106599887 coding downstream 196259 12698971 ~ 12700948 (+)
LOC110508573 LOC106599884 coding downstream 204246 12706958 ~ 12733540 (+)
LOC110508574 LOC106599880 coding downstream 246974 12749686 ~ 12756386 (+)
LOC110508578 LOC106599872 coding downstream 479093 12981805 ~ 13010377 (+)
G2104849 NA non-coding upstream 41829 12377185 ~ 12380458 (+)
G2104714 NA non-coding upstream 175048 12245916 ~ 12247239 (+)
G2104700 NA non-coding upstream 289954 12115285 ~ 12132333 (+)
G2104720 NA non-coding upstream 307373 12114688 ~ 12114914 (+)
G2104704 NA non-coding upstream 320958 12101130 ~ 12101329 (+)
G2105013 NA non-coding downstream 175148 12677860 ~ 12678822 (+)
G2104921 NA non-coding downstream 232391 12735103 ~ 12736453 (+)
G2105049 NA non-coding downstream 237369 12740081 ~ 12740723 (+)
G2105053 NA non-coding downstream 242689 12745401 ~ 12745611 (+)
G2105064 NA non-coding downstream 260606 12763318 ~ 12763555 (+)
G2104555 NA other upstream 489195 11889116 ~ 11933092 (+)
LOC110508540 LOC106600420 other upstream 931452 11488248 ~ 11491159 (+)
G2103533 LOC105021892 other upstream 1669327 10713576 ~ 10752960 (+)
G2103519 NA other upstream 1719267 10702728 ~ 10703020 (+)
LOC110508500 LOC106600383 other upstream 1899649 10510527 ~ 10524470 (+)
G2106278 NA other downstream 341675 12844387 ~ 12844904 (+)
G2106543 NA other downstream 624250 13126962 ~ 13127231 (+)
G2106548 NA other downstream 630687 13133399 ~ 13133761 (+)
G2106549 NA other downstream 631182 13133894 ~ 13134485 (+)
G2106557 NA other downstream 640601 13143313 ~ 13143595 (+)
G2104859 NA non-coding upstream 2923 12496398 ~ 12497103 (+)

Expression


Co-expression Network