LOC110508579 (arf1)


Basic Information

Item Value
gene id LOC110508579
gene name arf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 13060580 ~ 13065707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589181.2
agtttccccctcttcctctctggccaTGTGCCAAAGGCTCTGTTTCGGCCGTTTCACGGAAGTAATTCTGGAAGCTCTGACGTGACCAAATTATAATCGCCATCTTGAGGAAGGAAACGCCTTGAAGAGGAAAGAATTGAAAACAACTTTTTCATTCTGACAAAGTTGAATCCCTCATCTTCACTATGGGGAATTTATTTGCAAGTCTCTTTAAAGCATTTGGCAAGAAAGAGATGAGGATCCTCATGGTGGGTCTCGATGCTGCTGGTAAAACAACTATCCTGTACAAGTTAAAACTTGGAGAAATTGTTACTACCATACCAACTATAGGTTTTAACGTCGAGACAGTTGAGTACAAGAACATAAGTTTTACAGTGTGGGATGTAGGCGGTCAAGACAAAATTCGACCGTTGTGGCGTCATTACTTCCAGAACACACAGGGTCTTATCTTTGTTGTGGACAGCAATGACAGAGAGCGTGTGAACGAAGCCCGTGAAGAACTGATGAGAATGTTGGCAGAGGATGAACTACGAGAGGCAGTCTTATTAGTATTCGCTAACAAACAGGACCTCCCAAATGCTATGAATGCGGCCGAAATCACAGACAAGCTGGGACTGCACTCCCTCCGCCATAGAAACTGGTACATCCAGGCCACCTGTGCCACCAGCGGAGACGGTCTCTATGAAGGACTGGATTGGTTGTCTAATCAGTTAAAAAACCAGAAATAGGCCTAATCATCCGCTGTCCTCCTCAACTCACATATACCGTTTTCACACTATCCTGCCGACCCAAACCGTACGTACAGTGGCTCGCTCGGATGATTTCCTTTCACATTTTCCTTTCCAGCAAGGTTCTAGCAACTGTGGTAGATGAGAACCAGGCCGATGCAGTACAGCTCGGCttagtagtgtgaaaagggtaacACTATCTTCTCTCTTCCCTTGTTTGTACTCTTCTGATGTTACAAATTGAACTACTTTTGTCAAAACGTACCTACTGGAAAGCTGCCCTCATTTCTCATCTCTAGTTACAACAATGCACCATATGGGCCAGGGGGGATAATAACCCAATCTTGGAAAACTGTCAGGGTTTCTTATTTAATGTAAATAGtccatttctggggggggggggggggggggggggggttgttatgaGGAAGCTTATTGCACACTTACAAAAATCAACCTTGGTTATTTCCTCTTGGCCGTTGGGCAGACATACTCGTGTGTAGTAAATGGAAAAGGGaggcacatttttttttataccagCTATCATGGGACCCCGTGTCTCAACCTAACATTTAATgactgcggggggggggggttctgaatAATGCATATATACAGATGCACTACTTGAAACAATTATGGTTTAATACCTCAATGCTACAATGTCCTGCTCTCCCAAAATACCATTTATCAAAACACTGGCATTAACTAGTTGTACTGTGAGAATGTTCTTGAGGTGAAGCCTAAAACAGAGCTCTTGGGTTTCAAAGTCGAAAAGTCTTGTCAACACTTACCAGCTTTTTTTGTGTGCCATATCATTTTGAGAAGTGGCTGCCATGCAGTCTGTTCCTCTGAGTCTCATCATTCACCTGTTTTATGATGAACAGAGGTGCAGAGGTGTCTGTTCAGCATTGTTTGTATGACAGCGGCCTTTGTGGCAATGAACCTGAATTTATCATATCAAATAAAGTGCAGGATGTGGTCCATATGTTGGTCTTGTTGGCGAGCAACACGTGCATGTTAGAGATTCACAGATTCTGCACAAATCAACAGATCTTCACAATGCCTAGAGAAGCAGAATTCCTTCCTGCCTATCCATTTGCTATAATAATCACATATCCTTTGCAGAATCTATCTCAAACGCACTTTGATTGTCAACGGGACTAGCCAATTGATTGTTTACATTTTTAGTCTGCACAAGCGTTCTGTCGTTACCCCTCCTGTCAACTGCAGGTGCTCAAGGGTTGGGATGCCTTGATTTCCTCAACATCCTCATCACAATGACTTAGCGCCACAACAACCCTATAACTTAAGGTGTATGCTATATGATGCACTGGTTTGACAAAAGTTATAGGCCTACATTCTGATGTACTGCATTAGCCTCCATTATGACCTCAAGATGTTGTTTTCATGCCTTTTTATTGAAAATGATAAGTATATTAATTGTTTTGGAATGAGGCATGTATCATGTGTCAGTAGCAATAAGAAATCTGTATGAGCTCCACATTTTTGAAATTAGTGCTAGTATCTTCTCTCCTTTGCAGCTGTCAAAGAAATGTCAAAGAAACATGCTGTTCCATTACAAACCTTTGAGCTTCTTATCAAAAGGTTTTGGGTGTTATTCCACCAGCAGGGCTGGGATtgaattgaaggcagtcaattcaggaagtgaatttGAAACTTGATTGTAATACACTTTCGAAATGCTTCTACTCCACATTTTAAGTCGTTGAAAATATATGCGTTTTATTTCATTTTGCttcctgaattgaccccagccctgtccACCAGAGTGCTATGGAAATGTCTTTGTGTTTCTTTTAAAGGCGTTGGATTAAAACAACTTCTCTTGATTTTAAACTGATTGCTTGAACCTTTGTTGAAAACATTGTTAATCTCTTTACCAAAATGTCTAAAgaggtatttttttttaaatgtaaagttTGTTAAATTTTTTTTAGAAAAGCACTGTAATTAAAGCAATTAGATAatgtt

Function

symbol description
arf1 Predicted to enable GTP binding activity. Acts upstream of or within semicircular canal development. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; head; pharyngeal arch 3-7; and semicircular canal. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).

NR:

description
ADP-ribosylation factor 1 isoform X1

GO:

id name namespace
GO:0060872 semicircular canal development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589181.2 True 2723 mRNA 0.41 5 13060580 13065707

Neighbor

gene id symbol gene type direction distance location
LOC110508578 LOC106599872 coding upstream 50203 12981805 ~ 13010377 (+)
LOC110508574 LOC106599880 coding upstream 304194 12749686 ~ 12756386 (+)
LOC110508573 LOC106599884 coding upstream 327040 12706958 ~ 12733540 (+)
LOC110508572 LOC106599887 coding upstream 359632 12698971 ~ 12700948 (+)
pth1r LOC106599896 coding upstream 429743 12544539 ~ 12630837 (+)
LOC110508581 kgua coding downstream 14891 13080598 ~ 13102331 (+)
LOC100136204 LOC100136204 coding downstream 152290 13217997 ~ 13219450 (+)
LOC118944853 LOC100136204 coding downstream 159686 13225393 ~ 13226868 (+)
LOC110508587 LOC106599852 coding downstream 196422 13262129 ~ 13268809 (+)
LOC118944822 NA coding downstream 199501 13265208 ~ 13266471 (+)
G2106445 NA non-coding upstream 90290 12969709 ~ 12970290 (+)
G2106368 NA non-coding upstream 101822 12958474 ~ 12958758 (+)
G2106297 NA non-coding upstream 203319 12856965 ~ 12857261 (+)
G2106295 NA non-coding upstream 204144 12856225 ~ 12856436 (+)
G2106283 NA non-coding upstream 210964 12849349 ~ 12849616 (+)
G2106529 NA non-coding downstream 45031 13110738 ~ 13111244 (+)
G2106530 NA non-coding downstream 45792 13111499 ~ 13112434 (+)
G2106542 NA non-coding downstream 59498 13125205 ~ 13126540 (+)
G2106544 NA non-coding downstream 61775 13127482 ~ 13127925 (+)
G2106547 NA non-coding downstream 67265 13132972 ~ 13133341 (+)
G2106278 NA other upstream 215676 12844387 ~ 12844904 (+)
G2104555 NA other upstream 1127488 11889116 ~ 11933092 (+)
LOC110508540 LOC106600420 other upstream 1569745 11488248 ~ 11491159 (+)
G2103533 LOC105021892 other upstream 2307620 10713576 ~ 10752960 (+)
G2103519 NA other upstream 2357560 10702728 ~ 10703020 (+)
G2106543 NA other downstream 61255 13126962 ~ 13127231 (+)
G2106548 NA other downstream 67692 13133399 ~ 13133761 (+)
G2106549 NA other downstream 68187 13133894 ~ 13134485 (+)
G2106557 NA other downstream 77606 13143313 ~ 13143595 (+)
G2107033 NA other downstream 845720 13911427 ~ 13913227 (+)

Expression


Co-expression Network