LOC100136204 (LOC100136204)


Basic Information

Item Value
gene id LOC100136204
gene name LOC100136204
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 13217997 ~ 13219450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124480.1
AGACATGAAGATGAAGGTCCAGGTGAGATCTCTCATCCTGCTCGCTGTGGCTGTCCTGCAGGTCAGATCTCAGAACCAGACTGAGACCAGATATGAAGACATCATCTTAGTTGCTTTGCCTCAGCTGCTTCCTGGGGAAGAGCAGGCTTTCCGTCCAATTCTGAACCAGCTCCAAGTCAAGACTTTGAATACAGAGGATGTGGACCAGTCTGAGGTGTCTGTAAGGCTGACCTTCCCCATACAGGAGACTTTCTGTAGTAAATCACAGGGGCAGCCAGGCAAACCATGCCCTCTGAAGAAAAATGGGAAACTAATGATGTGCAGCATGAAAGTCAGACATCCGATTCTGGAGGCAAGCAACAACCTGAACACTGACCTGTCTACATTTGTTTGTGAATACATGGACGCAGAAGATGCTTTGCAGCAGCAGATTCGGACAAGAAGAAGCAAAGTCAGAATATGCTCCAGAGACAAAAATTGTGTCTCTCGTCCTGGGGTTGGCTCCATAATTGGTCGTCCTGGGGGTGGCTCCTTAATTGGTCGTCCTGGGGGTGGCTCCGTAATTGGTCGTCCTGGGGGTGGCTCTCCTCCTGGGGGTGGCTCTTTCAATGATGAATTTATCAGAGATCACAGTGATGGAAATCGCTTTGCATAGATCAGCACGCTACAACCTCTGGATAACTGCAAAGAACCCATCTATCAAAGAAATGTCATAAGGTTATTGATCTTTTTTTTTGTATCAACTCTTACATGCCAATTGTTGCATATTATGAAAATGACTTCTAGATTATGTTTACGCCAATAAACTGCAAAATAAGTTTACAAAA

Function

NR:

description
cathelicidin-derived antimicrobial peptide 1 isoform a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124480.1 True 827 mRNA 0.46 4 13217997 13219450

Neighbor

gene id symbol gene type direction distance location
LOC110508581 kgua coding upstream 115666 13080598 ~ 13102331 (+)
LOC110508579 arf1 coding upstream 152290 13060580 ~ 13065707 (+)
LOC110508578 LOC106599872 coding upstream 207620 12981805 ~ 13010377 (+)
LOC110508574 LOC106599880 coding upstream 461611 12749686 ~ 12756386 (+)
LOC110508573 LOC106599884 coding upstream 484457 12706958 ~ 12733540 (+)
LOC118944853 LOC100136204 coding downstream 5943 13225393 ~ 13226868 (+)
LOC110508587 LOC106599852 coding downstream 42679 13262129 ~ 13268809 (+)
LOC118944822 NA coding downstream 45758 13265208 ~ 13266471 (+)
LOC110508586 LOC106599847 coding downstream 50688 13270138 ~ 13284487 (+)
asb10 asb10 coding downstream 297212 13516662 ~ 13524124 (+)
G2106585 NA non-coding upstream 33274 13178922 ~ 13184723 (+)
G2106584 NA non-coding upstream 39165 13178558 ~ 13178832 (+)
G2106582 NA non-coding upstream 40056 13177405 ~ 13177941 (+)
G2106581 NA non-coding upstream 40782 13176808 ~ 13177215 (+)
G2106574 NA non-coding upstream 48743 13168834 ~ 13169254 (+)
G2106639 NA non-coding downstream 39288 13258738 ~ 13260387 (+)
G2106790 NA non-coding downstream 272467 13491917 ~ 13492206 (+)
G2106791 NA non-coding downstream 274460 13493910 ~ 13494200 (+)
G2106793 NA non-coding downstream 276848 13496298 ~ 13496528 (+)
G2106811 NA non-coding downstream 300169 13519619 ~ 13520604 (+)
G2106557 NA other upstream 74402 13143313 ~ 13143595 (+)
G2106549 NA other upstream 83512 13133894 ~ 13134485 (+)
G2106548 NA other upstream 84236 13133399 ~ 13133761 (+)
G2106543 NA other upstream 90766 13126962 ~ 13127231 (+)
G2106278 NA other upstream 373093 12844387 ~ 12844904 (+)
G2107033 NA other downstream 691977 13911427 ~ 13913227 (+)
G2109948 NA other downstream 2719061 15938511 ~ 15938857 (+)
G2109955 LOC106599720 other downstream 2728858 15948308 ~ 15948861 (+)
G2110507 LOC107717027 other downstream 3228662 16448112 ~ 16448502 (+)
LOC110508278 LOC106599701 other downstream 3593144 16809471 ~ 16813125 (+)

Expression


Co-expression Network