pif1 (pif1)


Basic Information

Item Value
gene id pif1
gene name pif1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30965713 ~ 30976082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589858.2
CCCTGCTGTTACTGGTCAAAATATGTTGCGCTGCCATTGGTTTATATTACAAACACCGACAGTTTTGAAAACTGCATTTTACTTCAGAAAGCACGAACTACAACGCAAGGCATCAATCTTTGCTCTAGCTACATTTTTATTCAAAGAGAGCCCGCACATTGTTACAATGATGCAAGGGGACGACGGTGCCCAGCTCCAGTGCAGTGTCGTGGTGGAGCGCCTGAACTCCTCTGGCCAGGCCACCAAACGCCAAGTCATCCGGAAGGCAGCTGTTCTTCTCGGTCGCAACGAGTTCCAGGAGATAATCCTGCGCGTGCACAACGGCAAAGTGACCGAAAGTTACACGCTCAAAGAGTTCCAGCTTTTTACCCGGTTTGCTAAGGATGGCAAGTGCACCGTCAAACTGCTCCCCGAAAACGTCCAAGTGCTCATCTCTGACTGCCCGCCCCACCTACTAAACATTTTCCTGAAGACCTTGAGTATCAAACACCAGGCCTGGCAGACTAGCAAACCTATGACAGACCGAGAGAAGCTGAAAGCCTGTCTGCCCCGCAGCTTCGAGACCATCAGCCCATTACAGCAGAAGGATGTACAGAAGGCCAATGAGCTGAGGAGCAAAGTGAATGCACCAGTGCTCTCTAAAGGTCTGGTAGTGAGGACTGGTAATAAGATGACAGGAGGACCACCGGGACAGCAGGTTAAGAGACAAAGGACGGACTGTGACTCTAGCCCATTGAAGGCACTCCACCCAAGCAAAAAGCCCACCCTGTCTCTACCGGCGGCACGGAAGTTGAACAAAGAACAAGCCGCTGTCCTCAGTGCTGTGTTGAGTGGGAAGAATGTTTTCTTCACCGGCAGTGCAGGCACAGGGAAGTCCTTCCTGTTGAAGAGGATTGTGGGCTCTCTGCCGCCCAAAAGCACTTACGCCACGGCCAGCACGGGCGTGGCGGCGTGTCACATCGGGGGGACAACGCTACACAACTTTGCTGGTATCGGGTCAGGCTCCGCCCCTCTGGAGCAGTGTATAGAGCTGGCCCAGAGGCCCGGGGTCCTGCAGCACTGGACTAGCTGTCGCCACCTCATCATCGACGAGATCTCCATGGTTGAGGCCCAGTTTTTCGACAAGCTGGAGGCCATAGCCAGGTGTCTGAGGAGGTCCACAGAGCCGTTTGGAGGAATCCATCTGATAGTGTGTGGGGACTTCCTCCAGCTGCCCCCGATCTCCAAGGAAAAGGACAAGGCCACGTTCTGCTTCCAGTCTAGAAGCTGGCGGAAGTGCATCCATCTGAACATGGAGCTGACTGAGGTGCGCAGACAGACTGACCAGTCTTTCATCTCCCTCCTGCAGGCAGTGAGGGTGGGCAGAGTCACAGAGGAAGTCACTGCCAAGTTGATAAAGAGCGCTTATCACAAGATCGAGCGGGATGGTATCCTGGCAACCAGGCTTTGCACTCACAAGGACGATGTAGAGCTCACTAACGACAACAAGCTCCAGCAGCTGCCAGGGTCAGTGCGGGTGTTTGAGGCTGTGGACAGCGACCCTGCACTGGTGAAGACCATAGACAGCCAGAGTCCCGTCAGCAGGCTGCTACAGCTTAAAGTGGGCGCTCAGGTCATGCTAACAAAGAACCTGGATGTCCAGCGTGGCCTGGTCAACGGGGCTCGAGGTGTCGTGGTGGACTTTCAGCCGGGGAAACTAGGGCTCCCACGCGTGCGTTTCCTGTGCGGCACCACTGAGGCGTTGAAGCCAGAGCGTTGGATGTTCAAGGCCGGAGGCGGGCTTTATCTGAGCCGCCAGCAGCTGCCACTCAAACTGGCCTGGGCCATCTCTATCCACAAGAGCCAGGGCATGACGCTGGACTGTGTGGAGATCTCCCTGGCACGTGTGTTTGAGAGGGGCCAGGCCTATGTGGCGCTGTCTCGGGCCAAGAGCCTGGAGGGGCTAAGGGTCATGGACTTTGACCCCCACGTGGTCCGTGCCGACCCCGACGTGCTGCACTTTTACAGCAAGCTGAGGAAAGAGCGGCTACTGTTGCAGGCTTCAATGAATGAGTTTGTGGGCAAAAGTAACAAGGCGAATCGTTGATGAGAAGGAACCCCTCAACAACCCAAATCGTGCAAACTATTTTAATTGAACATTTGATTTGTGGTTTTATTTCCATCTTTCAAGTGATTGTCTCGGGCTGTCGACTTTTAAAAAAAGTGTATACACATCATGGACTTTTGTACTGCCAACAACTTTAGTTTTATCTTTTATACCTGTTATTTATTGTCATGATCTTGACCATGTGGGAATGTTTATGACTTTTTAAGCAAATAAAGTTTTAGAACTAAACTGAAAAGTT
>XM_021589859.2
AGTTTTGAAAACTGCATTTTACTTCAGAAAGCACGAACTACAACGCAAGGCATCAATCTTTGCTCTAGCTACATTTTTATTCAAAGAGGTAAATCAAGTTACTACATCGAATTCTGGAGCGACCCTGTGTGTTTGTTAATCTGTTTTTCATGCATGAGCCCGCACATTGTTACAATGATGCAAGGGGACGACGGTGCCCAGCTCCAGTGCAGTGTCGTGGTGGAGCGCCTGAACTCCTCTGGCCAGGCCACCAAACGCCAAGTCATCCGGAAGGCAGCTGTTCTTCTCGGTCGCAACGAGTTCCAGGAGATAATCCTGCGCGTGCACAACGGCAAAGTGACCGAAAGTTACACGCTCAAAGAGTTCCAGCTTTTTACCCGGTTTGCTAAGGATGGCAAGTGCACCGTCAAACTGCTCCCCGAAAACGTCCAAGTGCTCATCTCTGACTGCCCGCCCCACCTACTAAACATTTTCCTGAAGACCTTGAGTATCAAACACCAGGCCTGGCAGACTAGCAAACCTATGACAGACCGAGAGAAGCTGAAAGCCTGTCTGCCCCGCAGCTTCGAGACCATCAGCCCATTACAGCAGAAGGATGTACAGAAGGCCAATGAGCTGAGGAGCAAAGTGAATGCACCAGTGCTCTCTAAAGGTCTGGTAGTGAGGACTGGTAATAAGATGACAGGAGGACCACCGGGACAGCAGGTTAAGAGACAAAGGACGGACTGTGACTCTAGCCCATTGAAGGCACTCCACCCAAGCAAAAAGCCCACCCTGTCTCTACCGGCGGCACGGAAGTTGAACAAAGAACAAGCCGCTGTCCTCAGTGCTGTGTTGAGTGGGAAGAATGTTTTCTTCACCGGCAGTGCAGGCACAGGGAAGTCCTTCCTGTTGAAGAGGATTGTGGGCTCTCTGCCGCCCAAAAGCACTTACGCCACGGCCAGCACGGGCGTGGCGGCGTGTCACATCGGGGGGACAACGCTACACAACTTTGCTGGTATCGGGTCAGGCTCCGCCCCTCTGGAGCAGTGTATAGAGCTGGCCCAGAGGCCCGGGGTCCTGCAGCACTGGACTAGCTGTCGCCACCTCATCATCGACGAGATCTCCATGGTTGAGGCCCAGTTTTTCGACAAGCTGGAGGCCATAGCCAGGTGTCTGAGGAGGTCCACAGAGCCGTTTGGAGGAATCCATCTGATAGTGTGTGGGGACTTCCTCCAGCTGCCCCCGATCTCCAAGGAAAAGGACAAGGCCACGTTCTGCTTCCAGTCTAGAAGCTGGCGGAAGTGCATCCATCTGAACATGGAGCTGACTGAGGTGCGCAGACAGACTGACCAGTCTTTCATCTCCCTCCTGCAGGCAGTGAGGGTGGGCAGAGTCACAGAGGAAGTCACTGCCAAGTTGATAAAGAGCGCTTATCACAAGATCGAGCGGGATGGTATCCTGGCAACCAGGCTTTGCACTCACAAGGACGATGTAGAGCTCACTAACGACAACAAGCTCCAGCAGCTGCCAGGGTCAGTGCGGGTGTTTGAGGCTGTGGACAGCGACCCTGCACTGGTGAAGACCATAGACAGCCAGAGTCCCGTCAGCAGGCTGCTACAGCTTAAAGTGGGCGCTCAGGTCATGCTAACAAAGAACCTGGATGTCCAGCGTGGCCTGGTCAACGGGGCTCGAGGTGTCGTGGTGGACTTTCAGCCGGGGAAACTAGGGCTCCCACGCGTGCGTTTCCTGTGCGGCACCACTGAGGCGTTGAAGCCAGAGCGTTGGATGTTCAAGGCCGGAGGCGGGCTTTATCTGAGCCGCCAGCAGCTGCCACTCAAACTGGCCTGGGCCATCTCTATCCACAAGAGCCAGGGCATGACGCTGGACTGTGTGGAGATCTCCCTGGCACGTGTGTTTGAGAGGGGCCAGGCCTATGTGGCGCTGTCTCGGGCCAAGAGCCTGGAGGGGCTAAGGGTCATGGACTTTGACCCCCACGTGGTCCGTGCCGACCCCGACGTGCTGCACTTTTACAGCAAGCTGAGGAAAGAGCGGCTACTGTTGCAGGCTTCAATGAATGAGTTTGTGGGCAAAAGTAACAAGGCGAATCGTTGATGAGAAGGAACCCCTCAACAACCCAAATCGTGCAAACTATTTTAATTGAACATTTGATTTGTGGTTTTATTTCCATCTTTCAAGTGATTGTCTCGGGCTGTCGACTTTTAAAAAAAGTGTATACACATCATGGACTTTTGTACTGCCAACAACTTTAGTTTTATCTTTTATACCTGTTATTTATTGTCATGATCTTGACCATGTGGGAATGTTTATGACTTTTTAAGCAAATAAAGTTTTAGAACTAAACTGAAAAGTT

Function

symbol description
pif1 Predicted to enable several functions, including 5'-3' DNA helicase activity; ATP binding activity; and DNA binding activity. Predicted to be involved in DNA duplex unwinding and DNA replication. Predicted to act upstream of or within DNA recombination; DNA repair; and telomere maintenance. Predicted to be located in mitochondrion and nucleus. Predicted to be active in replication fork. Is expressed in ectoderm; head; optic tectum; pectoral fin musculature; and proliferative region. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000002 mitochondrial genome maintenance biological_process
GO:0006310 DNA recombination biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K15255 PIF1; ATP-dependent DNA helicase PIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589858.2 False 2345 mRNA 0.53 13 30965713 30976082
XM_021589859.2 True 2353 mRNA 0.53 13 30965773 30976082

Neighbor

gene id symbol gene type direction distance location
LOC110508934 LOC106598943 coding upstream 63225 30883060 ~ 30902488 (+)
LOC110508931 LOC106598945 coding upstream 99647 30788979 ~ 30866066 (+)
LOC110508930 LOC106598949 coding upstream 213803 30721098 ~ 30751910 (+)
LOC110508929 LOC106598953 coding upstream 249071 30707254 ~ 30716642 (+)
LOC110508926 tm16h coding upstream 265362 30679644 ~ 30700351 (+)
LOC110508939 LOC106598934 coding downstream 101736 31077818 ~ 31080589 (+)
LOC110508946 LOC106598915 coding downstream 330026 31306108 ~ 31319060 (+)
LOC110508949 LOC106598913 coding downstream 359006 31335088 ~ 31340029 (+)
glmna glmn coding downstream 375425 31351507 ~ 31361674 (+)
LOC110508953 LOC106598905 coding downstream 422585 31398667 ~ 31406181 (+)
G2127348 NA non-coding upstream 200621 30764838 ~ 30765092 (+)
G2127333 NA non-coding upstream 247816 30717513 ~ 30717897 (+)
G2127315 NA non-coding upstream 288752 30676708 ~ 30676961 (+)
G2127312 NA non-coding upstream 291171 30673932 ~ 30674542 (+)
G2127310 NA non-coding upstream 296989 30668507 ~ 30668724 (+)
G2127430 NA non-coding downstream 1923 30978005 ~ 30978303 (+)
G2127434 NA non-coding downstream 4429 30980511 ~ 30984502 (+)
G2127432 NA non-coding downstream 9139 30985221 ~ 30986042 (+)
G2127736 NA non-coding downstream 116024 31092106 ~ 31092515 (+)
G2127743 gp177 non-coding downstream 162040 31138122 ~ 31144230 (+)
G2127299 LOC106598972 other upstream 324470 30640687 ~ 30641243 (+)
kcnn1a LOC106598974 other upstream 397135 30534338 ~ 30592397 (+)
G2126497 NA other upstream 754080 30210247 ~ 30211633 (+)
G2125614 LOC106599059 other upstream 1642329 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 1691262 29270737 ~ 29274454 (+)
LOC110508221 LOC106598877 other downstream 664220 31594783 ~ 31643462 (+)
G2128189 NA other downstream 763230 31739312 ~ 31740070 (+)
G2128614 NA other downstream 969082 31945164 ~ 31948898 (+)
LOC110508984 NA other downstream 1077594 32053231 ~ 32055655 (+)
G2128753 NA other downstream 1293236 32269318 ~ 32274380 (+)

Expression


Co-expression Network