LOC110508949 (LOC106598913)


Basic Information

Item Value
gene id LOC110508949
gene name LOC106598913
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31335088 ~ 31340029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589875.2
GAGGCCTTCTATTCCAGTGAACTCCATCCAGTGACAGTCCGTCTGGTTTTAAGGGTGGAGGCCCTCTAATCAAGTGAACTTCCACCTGCAGGAAAGTGAAAACCAGGAGAGAAGACAACAATGGACTATTCATGTCAGTCAAGATGCCTGGTCAGTTCAGTACACAAATAGTTCAGATAATGAATAGTTGCGAGATCCATTTAAAGGAATGTTTAGGATCTGTCTGAAATTACGCAGCTTCTGTGTGGGCATTGGCAGTGTCACAGCTAAGGATAAGTCTAGCCAGCCCATAACCCATAGGTCTAATATTGGAAACATCATTACAAACTCACAGCCCTACCTTGAGCTGTAAATAGACAAACAGAGTAAAATTGGGATATGGAAAAGCTGCTTTGGAACATGAGTTGTCTGTGGGAATTTTTAAATGATGATTCATTGGGTGTTGTGTTATTAATTCATGAGGAGGTATAACTTTGTtataacatcaaatcaaattggttGAAGTAATTTCATATGACTTGATTGTCAAACAAGGTAGAACAATTGAAGTAAGCGTACAAATGATTTAGAATAGCCCTTTATGTCATTAGTGATCAGGCCTAATCACTGTCTATTTACTGAAAGTTGTGCAAAAAAATCTGAAGTTCAGGAAGTTGTCAGCTGTTTAAAGGTCATGACAGCCGCACAGCTGCTGTGTTCAGATGAGAGAGAAGGGACGCTGCAAGTGGCGTCTATTACGCATGTGGACACCGTGTACGGAGATAAAATAGGTCCGTGTGGACGAAGAGGATTTCATCACAAGTGACCAGGGATCTTGACAGTCACACAGCAGAGAGTAACCATGCCGAGGTCATTTTTGGTGAAGAGTAAACGAGCACATAGCTACCACCAACCACGATACCTGGATGATGACTACATTAGAATGGATACTATTTTAGCCCATATATGCGCAGAAAGCAAATTGCAGGTTGAGTTTGAGGGGAACTGTGACGCGCAGGTTGCACCTAACCTCTCCCCCGAATCCCGTCTGGTGCACACGGCTGACCACTCGCCCATCTACCCGCTGAGCTGCGAGGGCAGCGTGTGCGACCGCTTCTCGGACTATGACGACTACTGGCGccctccatctccatctgcaTCACCAGATTCGGAACAATGCTTCACTCCGTCAGCAGACGACGCTCACCCTTTCGCCATTCCATTTCGCCCTTACCCATGGATTGCCTACTCTGGCTCCGAGCTCCGGCACCTTGTGCAGCGAACATATCAACACAATCTCCCCACAACCCTGGAGCCCGACATACAGATGGGCCTCTATGGATCCGAGGATGGTGCCACCACCTCCCTCATTTACGCACAGAGGGGCCCACACACTGGATATTATAGGGAATTTGGGTCGACGGTGTTCCCTACCTATAGAATGCGGGACGCCGACCAGTTATATTCGGACCACAAACTGAAGACCAAGGCCTCTGAAATCAAGTCTGAATCCGATCTCATCTGTTCCCGTATAGAACCAAGTGGATCGTACAAATGCATCAAGTGTTGCAAGGTATTCTCGACGCCGCACGGGTTAGAGGTTCACGTTCGTCGGTCGCATAGCGGTACTCGCCCCTTTGCCTGTGGATTGTGTGGGAAAACGTTTGGCCATGCAGTGAGTCTCGAACAACACAAGGGCGTTCACTCACAGGAGAGGAGCTTCAACTGTAAAATATGTGACAAAAGCTTCAAGCGCTCGTCTACGCTGTCCACGCACTTGCTTATCCACTCGGACACGCGGCCCTACCCTTGTCAGTACTGCGGGAAGAGATTCCATCAGAAGTCCGACATGAAGAAACACACCTTTATCCATACAGGTGAGAAGCCGCACAAGTGCCAGGTATGCGGGAAGGCCTTCAGTCAGAGCTCCAACCTCATCACGCACAGCCGCAAGCACACAGGCTTCAAACCTTTCGGCTGCGGCCTCTGCGGCAAAGGATTCCAAAGGAAAGTGGATATGAGGAGGCACAAGGAAACACAACATGGATTGAAATGAAAAACTGTCAACACCGAAAAAATGTGCTGGAGAATTgtattattttaatacatttagcGTAAACATGTCCCTTTCAAAATACGTTTATGTTATTCTACCATTGCTTGGCTATATGCCTAATTGTTTTCATTCTTGAATTATTGTTTTGAAaattaaacatgtatttattaaaTAGGCCTCTAGATTTTCATTAGCTACAGGCCAAATTCTGAATATCATTTCACACGACAGAAAAATACAGGATTTAAAAGTTTTGGTTGTGATCCACAAGGATTGTATTTGCGCATAATTCGTTTTAGCCTAGCCTATTTGTTTTCTTCTCGAGAAGAAACCGGCTGGTTAAATGCTATAGCTTAGTAGGCTATTTATCGGAACATTTTAATATTAATGCCTGTTTAATTAATTAACGCCTTTAATTATCCAACACAGTCGCTTTATAATCTGCTGTGTATACCGAATCCATGAGTTTATGAATTTATGCTCTTTTGTCTGaatatacattttaaatgttcccttgtcttttgt

Function

NR:

description
zinc finger protein Gfi-1-like

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09223 GFI1; growth factor independent 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589875.2 True 2560 mRNA 0.45 7 31335088 31340029

Neighbor

gene id symbol gene type direction distance location
LOC110508946 LOC106598915 coding upstream 16028 31306108 ~ 31319060 (+)
LOC110508939 LOC106598934 coding upstream 254499 31077818 ~ 31080589 (+)
pif1 pif1 coding upstream 359006 30965713 ~ 30976082 (+)
LOC110508934 LOC106598943 coding upstream 432600 30883060 ~ 30902488 (+)
LOC110508931 LOC106598945 coding upstream 469022 30788979 ~ 30866066 (+)
glmna glmn coding downstream 11478 31351507 ~ 31361674 (+)
LOC110508953 LOC106598905 coding downstream 58638 31398667 ~ 31406181 (+)
LOC110508956 tf2b coding downstream 81342 31421371 ~ 31431243 (+)
trnaa-ugc-191 NA coding downstream 106875 31446904 ~ 31446981 (+)
LOC110508961 LOC106598901 coding downstream 150870 31490899 ~ 31504889 (+)
G2128008 NA non-coding upstream 3963 31330796 ~ 31331125 (+)
G2127977 NA non-coding upstream 34162 31300401 ~ 31300926 (+)
G2127970 NA non-coding upstream 44400 31289584 ~ 31290688 (+)
G2127944 LOC106582599 non-coding upstream 91316 31243396 ~ 31243772 (+)
G2127942 NA non-coding upstream 93143 31241560 ~ 31241945 (+)
G2128014 NA non-coding downstream 3265 31343294 ~ 31343518 (+)
G2128015 NA non-coding downstream 3866 31343895 ~ 31344101 (+)
G2128016 NA non-coding downstream 4438 31344467 ~ 31344733 (+)
G2128018 NA non-coding downstream 5721 31345750 ~ 31345976 (+)
G2127993 NA non-coding downstream 7923 31347952 ~ 31349896 (+)
G2127299 LOC106598972 other upstream 693845 30640687 ~ 30641243 (+)
kcnn1a LOC106598974 other upstream 766510 30534338 ~ 30592397 (+)
G2126497 NA other upstream 1123455 30210247 ~ 30211633 (+)
G2125614 LOC106599059 other upstream 2011704 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 2060637 29270737 ~ 29274454 (+)
LOC110508221 LOC106598877 other downstream 300273 31594783 ~ 31643462 (+)
G2128189 NA other downstream 399283 31739312 ~ 31740070 (+)
G2128614 NA other downstream 605135 31945164 ~ 31948898 (+)
LOC110508984 NA other downstream 713647 32053231 ~ 32055655 (+)
G2128753 NA other downstream 929289 32269318 ~ 32274380 (+)

Expression


Co-expression Network