LOC110508961 (LOC106598901)


Basic Information

Item Value
gene id LOC110508961
gene name LOC106598901
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31490899 ~ 31504889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471378.2
ATACGAATGGAATGTAACTGTGAGTGACTGATAAAAGAAGAGAAATTAAAGGTGCCCTTCTGTTTGCCATCTGAAAATAGGAATACAAATTACAAATTTGTATTAGACAAATAACATAAACAACCAGATATTATTTTGCGAATTTATGATctcgttttttttaaatataaagatAATTACTAAACAACGTGTATATTACAATTTACAGGGCATTAGGCACTTGCCAGTAGCTACTACTTCCTACTTTTTAAGGGGTCCTCAGTTTTCTTCCGTAACAAAGCAATCGCCAAAATGTCGGGGGAGGTGTATATTTTGTGGCTTCTTTCTCTCATACAAACGCTTTCGGCCTATGGAGCCGACCTGTCCTCAGAGGCATGCAGGGAGCTGGGCTTCTCCAGCAACCTCCTGTGCAGCTCCTGTGACCTGCTGGGAGAGTTCAGCCTGGGCCAGATCCAGCCTGTCTGTAGACAGTGCTGCCAGCAGGAGGCCCAGATGGAGTCCAGGAAGCTCTACCCTGGGGCCATCCTGGAAGTGTGTGGATGAAAGTTGGGGAGGTTCCCTCAAGTCCAAGCTTTTGTCAGGTCTGACAAGCCGAAGATGTTCAAGGGTCTTCAAATTAAGTATGTGAGAGGCGCAGACCCTATACTAAAGCTGCTGGACGATAACGGGAACATCGCTGAAGAACTCAGCATCCTCAAGTGGAACACGGATAGCGTGGAGGAATTCCTAAGCGAGAAGTTGGAAGTATATAATACTGATTCATAGTGCATCATAACCTTTTTCCCTGCTACAAATCTGTGCAccatttggatttgattttctaATTGTATGTTGAAGTACTgcactgttaaaaaaaaaaattttttttacctGAAAATCAATCTGTAGTTTTTCCTAATTACATTTTGTGCCAGGATGTAAAACGTCTGTTTTGTAGATTTGTGAACATATCAAAATACTTAAACCTACATGCAGAATACCTGCTGTTAACTTTTAAATGATTGGAATGAATTATCCAAAGCGAGTGTAAAGATTTTCAGTGcttgttacattttatttttgaatgttttttttccctcctCCCGTCTGTCAGTTGTCCCTGTGTAGTTTTTTAAAATATTGCTAATGGTGTCAGCAGGAGGATTTTAGGGTGGGGGATCTAAGTGTCTCACCTCATGAGAATGTTCTGGGGAGGCACACATTAATGAAGGCCTCACAGTAAACCACAGTTTGGGATGTGAGACCTGATGgccctgtgtgtttctctgggcGTCTTGCTGTGGAGAGGGACTGGATTCCCCAGTGTGTGAATGAGTATGGGGAGGAGGAAAAACGCTGCAATTAATAAAATGTCTTTCACGGTA
>TU2433014
GTTTTCTTCCGTAACAAAGCAATCGCCAAAATGTCGGGGGAGGTGTATATTTTGTGGCTTCTTTCTCTCATACAAACGCTTTCGGCCTATGGAGCCGACCTGTCCTCAGAGGCATGCAGGGAGCTGGGCTTCTCCAGCAACCTCCTGTGCAGCTCCTGTGACCTGCTGGGAGAGTTCAGCCTGGGCCAGATCCAGCCTGTCTGTAGACAGTGCTGCCAGCAGGAGGCCCAGATGGAGTCCAGGAAGCTCTACCCTGGGGCCATCCTGGAAGTGTGTGGATGAAAGTTGGGGAGGTTCCCTCAAGTCCAAGCTTTTGTCAGGTCTGACAAGCCGAAGATGTTCAAGGGTCTTCAAATTAAGTATGTGAGAGGCGCAGACCCTATACTAAAGCTGCTGGACGATAACGGGAACATCGCTGAAGAACTCAGCATCCTCAAGTGGAACACGGATAGCGTGGAGGAATTCCTAAGCGAGAAGTTGGAAGTATATAATACTGATTCATAGTGCATCATAACCTTTTTCCCTGCTACAAATCTGTGCAccatttggatttgattttctaATTGTATGTTGAAGTACTgcactgttaaaaaaaaaaattttttttacctGAAAATCAATCTGTAGTTTTTCCTAATTACATTTTGTGCCAGGATGTAAAACGTCTGTTTTGTAGATTTGTGAACATATCAAAATACTTAAACCTACATGCAGAATACCTGCTGTTAACTTTTAAATGATTGGAATGAATTATCCAAAGCGAGTGTAAAGATTTTCAGTGcttgttacattttatttttgaatgttttttttccctcctCCCGTCTGTCAGTTGTCCCTGTGTAGTTTTTTAAAATATTGCTAATGGTGTCAGCAGGAGGATTTTAGGGTGGGGGATCTAAGTGTCTCACCTCATGAGAATGTTCTGGGGAGGCACACATTAATGAAGGCCTCACAGTAAACCACAGTTTGGGATGTGAGACCTGATGgccctgtgtgtttctctgggcGTCTTGCTGTGGAGAGGGACTGGATTCCCCAGTGTGTGAATGAGTATGGGGAGGAGGAAAAACGCTGCAATTAATAAAATGTCTTTCACGGTATTTATTTCTAA

Function

NR:

description
PREDICTED: 15 kDa selenoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471378.2 False 1364 mRNA 0.42 5 31490899 31504878
TU2433014 True 1114 lncRNA 0.44 5 31491160 31504889

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-191 NA coding upstream 43918 31446904 ~ 31446981 (+)
LOC110508956 tf2b coding upstream 59656 31421371 ~ 31431243 (+)
LOC110508953 LOC106598905 coding upstream 84718 31398667 ~ 31406181 (+)
glmna glmn coding upstream 129225 31351507 ~ 31361674 (+)
LOC110508949 LOC106598913 coding upstream 150870 31335088 ~ 31340029 (+)
LOC110508962 LOC106568816 coding downstream 19395 31524273 ~ 31540827 (+)
trnav-cac-87 NA coding downstream 57032 31561910 ~ 31561982 (+)
trnav-cac-88 NA coding downstream 57455 31562333 ~ 31562405 (+)
LOC110508964 bok coding downstream 64735 31569613 ~ 31576840 (+)
LOC110508221 LOC106598877 coding downstream 89905 31594783 ~ 31643462 (+)
G2128059 LOC106598894 non-coding upstream 42825 31447371 ~ 31448074 (+)
G2128043 LOC106598907 non-coding upstream 95133 31395514 ~ 31395766 (+)
G2128040 NA non-coding upstream 100345 31390325 ~ 31390554 (+)
G2128038 NA non-coding upstream 102769 31387902 ~ 31388130 (+)
G2128036 NA non-coding upstream 104346 31386318 ~ 31386553 (+)
G2128091 LOC106598900 non-coding downstream 4002 31508880 ~ 31511139 (+)
G2128093 NA non-coding downstream 10109 31514987 ~ 31515212 (+)
G2128138 NA non-coding downstream 111808 31616686 ~ 31617671 (+)
G2128139 NA non-coding downstream 113088 31617966 ~ 31618350 (+)
G2127299 LOC106598972 other upstream 849656 30640687 ~ 30641243 (+)
kcnn1a LOC106598974 other upstream 922321 30534338 ~ 30592397 (+)
G2126497 NA other upstream 1279266 30210247 ~ 30211633 (+)
G2125614 LOC106599059 other upstream 2167515 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 2216448 29270737 ~ 29274454 (+)
G2128189 NA other downstream 234434 31739312 ~ 31740070 (+)
G2128614 NA other downstream 440286 31945164 ~ 31948898 (+)
LOC110508984 NA other downstream 548798 32053231 ~ 32055655 (+)
G2128753 NA other downstream 764440 32269318 ~ 32274380 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G28354 NA unknown CI01000004 null 6572819 ~ 6574421 (+)
grasscarp (Ctenopharyngodon idella) G395340 NA non-coding CI01000225 null 462156 ~ 522868 (-)
striped catfish (Pangasianodon hypophthalmus) G13525 NA non-coding NC_047595.1 CM018541.1 24228287 ~ 24228494 (+)
bowfin (Amia calva) G144050 selenof,LOC106598901 unknown CM030140.1 CM030140.1 8353989 ~ 8377001 (-)
tiger barb (Puntius tetrazona) selenof selenof,sep15,LOC107693704,LOC106598901 misc NC_056700.1 CM032069.1 10158532 ~ 10161809 (+)