G2128059 (LOC106598894)


Basic Information

Item Value
gene id G2128059
gene name LOC106598894
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31447371 ~ 31448074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2433093
TTTCCTTCTGTATGGCTGTGAGCTCCAGGCCTGGAGGCTGGATCTCCTGCTCTGCTACCTTGTCTAGTCTGTCTAGGTCTGACGACTTCACAGCTATGCTGTTCCTCTTGTTCAGGAAGTCAAACGATGCCAGGGCGTCCTGCAACAGCATAACACACTTTTTAGGAGGATGGGGCAGCGTGGTTGTGTTCAATGTGGCACACTGTACTTCCTCCTTGTCGGGCAGTTTGTTGTCCTGTGCCAGTGGTTCTCTGATGCCAGCGGGTACAGGGTAATGCTTGGGTCCCGGGGTGGGCTCTTTGTCAAAGTCCAGCTTGGTCACCAACGGTTCACTGATgggactggaaggaaaggtgcCACATCTTAATGAGAGAGTCTACAGACTGTATGTGTGAAGATGTTATGAAGGTCTCTGGCatttgtgacagtgtgtgtgttgcgtgcatGTGCACACAAACGCCCGTGTGAATTCATG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2433093 True 475 lncRNA 0.52 2 31447371 31448074

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-191 NA coding upstream 390 31446904 ~ 31446981 (+)
LOC110508956 tf2b coding upstream 16128 31421371 ~ 31431243 (+)
LOC110508953 LOC106598905 coding upstream 41190 31398667 ~ 31406181 (+)
glmna glmn coding upstream 85697 31351507 ~ 31361674 (+)
LOC110508949 LOC106598913 coding upstream 107342 31335088 ~ 31340029 (+)
LOC110508961 LOC106598901 coding downstream 42825 31490899 ~ 31504889 (+)
LOC110508962 LOC106568816 coding downstream 76199 31524273 ~ 31540827 (+)
trnav-cac-87 NA coding downstream 113836 31561910 ~ 31561982 (+)
trnav-cac-88 NA coding downstream 114259 31562333 ~ 31562405 (+)
LOC110508964 bok coding downstream 121539 31569613 ~ 31576840 (+)
G2128043 LOC106598907 non-coding upstream 51605 31395514 ~ 31395766 (+)
G2128040 NA non-coding upstream 56817 31390325 ~ 31390554 (+)
G2128038 NA non-coding upstream 59241 31387902 ~ 31388130 (+)
G2128036 NA non-coding upstream 60818 31386318 ~ 31386553 (+)
G2128034 NA non-coding upstream 66251 31380666 ~ 31381120 (+)
G2128091 LOC106598900 non-coding downstream 60806 31508880 ~ 31511139 (+)
G2128093 NA non-coding downstream 66913 31514987 ~ 31515212 (+)
G2128138 NA non-coding downstream 168612 31616686 ~ 31617671 (+)
G2128139 NA non-coding downstream 169892 31617966 ~ 31618350 (+)
G2127299 LOC106598972 other upstream 806128 30640687 ~ 30641243 (+)
kcnn1a LOC106598974 other upstream 878793 30534338 ~ 30592397 (+)
G2126497 NA other upstream 1235738 30210247 ~ 30211633 (+)
G2125614 LOC106599059 other upstream 2123987 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 2172920 29270737 ~ 29274454 (+)
LOC110508221 LOC106598877 other downstream 192228 31594783 ~ 31643462 (+)
G2128189 NA other downstream 291238 31739312 ~ 31740070 (+)
G2128614 NA other downstream 497090 31945164 ~ 31948898 (+)
LOC110508984 NA other downstream 605602 32053231 ~ 32055655 (+)
G2128753 NA other downstream 821244 32269318 ~ 32274380 (+)

Expression


Co-expression Network