RNA id: XR_002471378.2


Basic Information

Item Value
RNA id XR_002471378.2
length 1364
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110508961
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31490899 ~ 31504889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACGAATGGAATGTAACTGTGAGTGACTGATAAAAGAAGAGAAATTAAAGGTGCCCTTCTGTTTGCCATCTGAAAATAGGAATACAAATTACAAATTTGTATTAGACAAATAACATAAACAACCAGATATTATTTTGCGAATTTATGATctcgttttttttaaatataaagatAATTACTAAACAACGTGTATATTACAATTTACAGGGCATTAGGCACTTGCCAGTAGCTACTACTTCCTACTTTTTAAGGGGTCCTCAGTTTTCTTCCGTAACAAAGCAATCGCCAAAATGTCGGGGGAGGTGTATATTTTGTGGCTTCTTTCTCTCATACAAACGCTTTCGGCCTATGGAGCCGACCTGTCCTCAGAGGCATGCAGGGAGCTGGGCTTCTCCAGCAACCTCCTGTGCAGCTCCTGTGACCTGCTGGGAGAGTTCAGCCTGGGCCAGATCCAGCCTGTCTGTAGACAGTGCTGCCAGCAGGAGGCCCAGATGGAGTCCAGGAAGCTCTACCCTGGGGCCATCCTGGAAGTGTGTGGATGAAAGTTGGGGAGGTTCCCTCAAGTCCAAGCTTTTGTCAGGTCTGACAAGCCGAAGATGTTCAAGGGTCTTCAAATTAAGTATGTGAGAGGCGCAGACCCTATACTAAAGCTGCTGGACGATAACGGGAACATCGCTGAAGAACTCAGCATCCTCAAGTGGAACACGGATAGCGTGGAGGAATTCCTAAGCGAGAAGTTGGAAGTATATAATACTGATTCATAGTGCATCATAACCTTTTTCCCTGCTACAAATCTGTGCAccatttggatttgattttctaATTGTATGTTGAAGTACTgcactgttaaaaaaaaaaattttttttacctGAAAATCAATCTGTAGTTTTTCCTAATTACATTTTGTGCCAGGATGTAAAACGTCTGTTTTGTAGATTTGTGAACATATCAAAATACTTAAACCTACATGCAGAATACCTGCTGTTAACTTTTAAATGATTGGAATGAATTATCCAAAGCGAGTGTAAAGATTTTCAGTGcttgttacattttatttttgaatgttttttttccctcctCCCGTCTGTCAGTTGTCCCTGTGTAGTTTTTTAAAATATTGCTAATGGTGTCAGCAGGAGGATTTTAGGGTGGGGGATCTAAGTGTCTCACCTCATGAGAATGTTCTGGGGAGGCACACATTAATGAAGGCCTCACAGTAAACCACAGTTTGGGATGTGAGACCTGATGgccctgtgtgtttctctgggcGTCTTGCTGTGGAGAGGGACTGGATTCCCCAGTGTGTGAATGAGTATGGGGAGGAGGAAAAACGCTGCAATTAATAAAATGTCTTTCACGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433093 lncRNA upstream 42825 31447371 ~ 31448074 (+) True G2128059
TU2433075 lncRNA upstream 95133 31395514 ~ 31395766 (+) True G2128043
TU2433072 lncRNA upstream 100345 31390325 ~ 31390554 (+) True G2128040
TU2433070 lncRNA upstream 102769 31387902 ~ 31388130 (+) True G2128038
TU2433068 lncRNA upstream 104346 31386318 ~ 31386553 (+) True G2128036
TU2433131 lncRNA downstream 4002 31508880 ~ 31511049 (+) False G2128091
TU2433132 lncRNA downstream 4002 31508880 ~ 31511139 (+) True G2128091
TU2433134 lncRNA downstream 10109 31514987 ~ 31515212 (+) True G2128093
TU2433196 lncRNA downstream 111808 31616686 ~ 31617671 (+) True G2128138
TU2433197 lncRNA downstream 113088 31617966 ~ 31618350 (+) True G2128139
trnaa-ugc-191 mRNA upstream 43918 31446904 ~ 31446981 (+) True trnaa-ugc-191
XM_021589884.2 mRNA upstream 59656 31421371 ~ 31431243 (+) True LOC110508956
XM_036966570.1 mRNA upstream 84718 31398667 ~ 31406181 (+) True LOC110508953
XM_021589876.2 mRNA upstream 129225 31351507 ~ 31361674 (+) False glmna
XM_036966026.1 mRNA upstream 129225 31351507 ~ 31361674 (+) True glmna
XM_021589890.2 mRNA downstream 19395 31524273 ~ 31540827 (+) False LOC110508962
XM_021589891.2 mRNA downstream 19395 31524273 ~ 31540827 (+) False LOC110508962
XM_036966103.1 mRNA downstream 19396 31524274 ~ 31540827 (+) False LOC110508962
XM_036966104.1 mRNA downstream 19397 31524275 ~ 31540827 (+) False LOC110508962
XM_036966106.1 mRNA downstream 22899 31527777 ~ 31540827 (+) True LOC110508962
TU2432265 other upstream 849656 30640687 ~ 30641243 (+) True G2127299
TU2432201 other upstream 922321 30534851 ~ 30568578 (+) True kcnn1a
TU2431344 other upstream 1279266 30210247 ~ 30211633 (+) True G2126497
TU2430337 other upstream 2167515 29320743 ~ 29323384 (+) True G2125614
TU2430303 other upstream 2216448 29270785 ~ 29274451 (+) True LOC110508880
TU2433148 other downstream 135424 31640302 ~ 31643336 (+) False LOC110508221
TU2433149 other downstream 135424 31640302 ~ 31643462 (+) False LOC110508221
TU2433251 other downstream 234434 31739312 ~ 31740070 (+) True G2128189
TU2433758 other downstream 440286 31945164 ~ 31948302 (+) False G2128614
TU2433827 other downstream 548798 32053676 ~ 32054943 (+) False LOC110508984

Expression Profile