bbs1 (bbs1)


Basic Information

Item Value
gene id bbs1
gene name bbs1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 34156709 ~ 34163950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591475.2
AACGGGAAAGCCGATCTGATTAATGCTAACGTAAACAAACAGGCGAGCTAACGTTAACCAGCTAGCTACCTCAGTGGCACAAAATATCCTTGCAATATTAATTGAGGAATATCATATTGGACATGTCTTCTGTCTCACAGATGAAAGAAAACTCTGAGACCAGTAAATGGTTAGATGCACACTACGATCCAGTGGCCAATCTCTATACTTTTTCATCTTGCATTGCTCTTGCAGACCTGCATGGGGATGGTGAGAATAAGTTGGTGGTGGGGGACCTGGGAACTGGTTCATGCAACATGAAGCTGAAGGTGTACCGTGGAACTGGCCTGATGAGTGAGAACACGTTGCTCGATCTGCCCACTGGCTTGGTTTCTTTCCTCATGGACCAGCATGAGCCACGCACGCCTGCCATCGCTGTGGCTTCCGGCCCCTTCATCTATGTCTATAAAAACTTGCGGCCCTATTTCAAGTTCACTCTCCCTCCGTTAGAGGTCAATGCTCTGGAACAGGACGTCTGGAACCAGGCAAGGGAGGACATGATTGACCCATTGAGCTTGAAGGAAATGTTGGAGGGCATCCGAGACAAAGCTGATGTTCCACTCTCCGTCAGATCTTTGAGGTTCCTCATGTTGGACCCACAAGACACGGAGGCTTTTGTGAACCTTCATAAGGCGCAGCCAATACGAAGACAGACTGTTATTACATGCATCGGCACCCTGAAGAAGAACATGGCTGATGAGGATGCAGTCAGCTGTCTGGTTATTGGCACTGAGAGTAAAGATGTCTATATCCTGGACCCTGAGGCCTTCACCATCCTCTCGAAGATGTCCGTCCCCAGTGCTCCCACTCAAATGGATGTGACTGGTCAGTTTGATGTGGAGTTCCGGATCACTGTGGCCTGTCGCAATGGGAATATCTACATCCTCCGCAGGGACTCCCCCAAGCCCAAGTACTGTATTGAGCTGTCTTCTCACCCTGTGGGGCTGGTGAGGATGGGGAAGAGTGTGGTGGTGGGATGTGCCCAGGAGACCCTGCAGGGCTTCACACAGAAGGGGAAGAAGCTGTGGACGGCTTGCCTGCCAGCCCCTGTCACTACCATGGGCGTGATGGACCTCCCCACCAGGGGCTTCCAGGCTGTGTTAGTGGGCCTGGCTAACTGTGAGGTCCACCTCTACAGAGACAAAAACCTCATCAGCACCATCAAGACTCCGGATGTAGTGACCAGCATTTGTTTTGGGAGATATGGACGAGAAGACGGAACCCTTATAATGACCACCAAAGGAGGTGGTCTGATAGTAAAGATCCTGAAGAGGACAGCTGTGTTTGATGACAGGGACTCTGCCCCAGGTCCCCCTCTGGCACAAAGCATCCGCCTCAATATCCCCAAGAAGACCAAGCTGTACGTGGACCAAACCATGAGGGAACGGGAGAATGCTGTGGCAATGCACAGGGCCTTCCAGATGGACCTGAGTCGTCTGCGTCTGGCTGCAGCGAGGGCCTACGTTAAAGCCCTGGAGTCCAGCCTTACACCCATGTCCTCCAGCCTGTCTGAGCCTCTCAAGATGAACGCAGTGGTGCAGGGCCTGGGCCCGTCCTTCAAGCTAACTCTGAACATCCAGAACACAGCCGCATGCCGTCCTGTCATGCACTTGGCCATCAGCTTTCTGTATGATGAGAGCCTGTATAGTATGAGGACAGCCTTCTTTAAGATCCCCCTACTGGTTCCTGGGCTCAACTATCCTATTGACACATTTGTGGAGTGCCTGAGTGATAAAGGAATCTCTGACATCATTAAAGTGTTTGTGCTGCGAGAGGGCAAGAGTGCACCCCTGCTGACTGCCCATATCAACATGCCCGTCAGTGAGGGACTGGCACTcaactgagagagggagagcgagcgagcagcATCTTTAGGCCCTGGGCTGGCCTCTATGCTCTCACCCTGTGCTTCTAGCCCCCTCTAGTGGCAGGGCTGACTCGAGGTGACTGGGACGTTAACAGGATCAGCTTGTGTTGGCCCCAGAGGTGGTTAAAAGCCATGTGTAGCATACGTACGGTAGGACAGGAAGTAGGGCTATTTGTCCTTAGAGAGAACTCCATAGAGAGAAATGGGTTTATGATTGTATCACAGGATTTAAAATCCAAACGTAAGTGA
>XM_036967299.1
AACGGGAAAGCCGATCTGATTAATGCTAACGTAAACAAACAGGCGAGCTAACGTTAACCAGCTAGCTACCTCAGTGGCACAAAATATCCTTGCAATATTAATTGAGGAATATCATATTGGACATGTCTTCTGTCTCACAGATGAAAGAAAACTCTGAGACCAGTAAATGGTTAGATGCACACTACGATCCAGTGGCCAATCTCTATACTTTTTCATCTTGCATTGCTCTTGCAGACCTGCATGGGGATGGTGAGAATAAGTTGGTGGTGGGGGACCTGGGAACTGGTTCATGCAACATGAAGCTGAAGGTGTACCGTGGAACTGGCCTGATGAGTGAGAACACGTTGCTCGATCTGCCCACTGGCTTGGTTTCTTTCCTCATGGACCAGCATGAGCCACGCACGCCTGCCATCGCTGTGGCTTCCGGCCCCTTCATCTATGTCTATAAAAACTTGCGGCCCTATTTCAAGTTCACTCTCCCTCCGTTAGAGGTCAATGCTCTGGAACAGGACGTCTGGAACCAGGCAAGGGAGGACATGATTGACCCATTGAGCTTGAAGGAAATGTTGGAGGGCATCCGAGACAAAGCTGATGTTCCACTCTCCGTCAGATCTTTGAGGTTCCTCATGTTGGACCCACAAGACACGGAGGCTTTTGTGAACCTTCATAAGGCGCAGCCAATACGAAGACAGACTGTTATTACATGCATCGGCACCCTGAAGAAGAACATGGCTGATGAGGATGCAGTCAGCTGTCTGGTTATTGGCACTGAGAGTAAAGATGTCTATATCCTGGACCCTGAGGCCTTCACCATCCTCTCGAAGATGTCCGTCCCCAGTGCTCCCACTCAAATGGATGTGACTGGTCAGTTTGATGTGGAGTTCCGGATCACTGTGGCCTGTCGCAATGGGAATATCTACATCCTCCGCAGGGACTCCCCCAAGCCCAAGTACTGTATTGAGCTGTCTTCTCACCCTGTGGGGCTGGTGAGGATGGGGAAGAGTGTGGTGGTGGGATGTGCCCAGGAGACCCTGCAGGGCTTCACACAGAAGaggcctgtgtgtgtgtcttgtcctgtcctctgTGTCCAGGGGAAGAAGCTGTGGACGGCTTGCCTGCCAGCCCCTGTCACTACCATGGGCGTGATGGACCTCCCCACCAGGGGCTTCCAGGCTGTGTTAGTGGGCCTGGCTAACTGTGAGGTCCACCTCTACAGAGACAAAAACCTCATCAGCACCATCAAGACTCCGGATGTAGTGACCAGCATTTGTTTTGGGAGATATGGACGAGAAGACGGAACCCTTATAATGACCACCAAAGGAGGTGGTCTGATAGTAAAGATCCTGAAGAGGACAGCTGTGTTTGATGACAGGGACTCTGCCCCAGGTCCCCCTCTGGCACAAAGCATCCGCCTCAATATCCCCAAGAAGACCAAGCTGTACGTGGACCAAACCATGAGGGAACGGGAGAATGCTGTGGCAATGCACAGGGCCTTCCAGATGGACCTGAGTCGTCTGCGTCTGGCTGCAGCGAGGGCCTACGTTAAAGCCCTGGAGTCCAGCCTTACACCCATGTCCTCCAGCCTGTCTGAGCCTCTCAAGATGAACGCAGTGGTGCAGGGCCTGGGCCCGTCCTTCAAGCTAACTCTGAACATCCAGAACACAGCCGCATGCCGTCCTGTCATGCACTTGGCCATCAGCTTTCTGTATGATGAGAGCCTGTATAGTATGAGGACAGCCTTCTTTAAGATCCCCCTACTGGTTCCTGGGCTCAACTATCCTATTGACACATTTGTGGAGTGCCTGAGTGATAAAGGAATCTCTGACATCATTAAAGTGTTTGTGCTGCGAGAGGGCAAGAGTGCACCCCTGCTGACTGCCCATATCAACATGCCCGTCAGTGAGGGACTGGCACTcaactgagagagggagagcgagcgagcagcATCTTTAGGCCCTGGGCTGGCCTCTATGCTCTCACCCTGTGCTTCTAGCCCCCTCTAGTGGCAGGGCTGACTCGAGGTGACTGGGACGTTAACAGGATCAGCTTGTGTTGGCCCCAGAGGTGGTTAAAAGCCATGTGTAGCATACGTACGGTAGGACAGGAAGTAGGGCTATTTGTCCTTAGAGAGAACTCCATAGAGAGAAATGGGTTTATGATTGTATCACAGGATTTAAAATCCAAACGTAAGTGAACTTGTAAGCTGTGTGTTGGTGGATAGAGATGTCAGGACAATTATCGTAATTATGAATACAAGTGTATAaagtcattatatatatatatatctcagcaTTATTTATTGCTCTTTAAAGTTTGTTAAATAATTGCCGGGAAAAAAACAGATGTGCTGCTAATTTTTTAATGTTCAGATCATTCATTGCACTTTATTTTCAAAAATGAAAGCTAACAAAAATCCATACATTCCTGAGTTGTGCAGCAGTATCCAGAAAGAGTTGGCTTttcaaacaaatgtatttaataaaACCTTTAAATGACTTTTATTTTCA
>XM_036967300.1
AACGGGAAAGCCGATCTGATTAATGCTAACGTAAACAAACAGGCGAGCTAACGTTAACCAGCTAGCTACCTCAGTGGCACAAAATATCCTTGCAATATTAATTGAGGAATATCATATTGGACATGTCTTCTGTCTCACAGATGAAAGAAAACTCTGAGACCAGTAAATGGTTAGATGCACACTACGATCCAGTGGCCAATCTCTATACTTTTTCATCTTGCATTGCTCTTGCAGACCTGCATGGGGATGGTGAGAATAAGTTGGTGGTGGGGGACCTGGGAACTGGTTCATGCAACATGAAGCTGAAGGTGTACCGTGGAACTGGCCTGATGAGTGAGAACACGTTGCTCGATCTGCCCACTGGCTTGGTTTCTTTCCTCATGGACCAGCATGAGCCACGCACGCCTGCCATCGCTGTGGCTTCCGGCCCCTTCATCTATGTCTATAAAAACTTGCGGCCCTATTTCAAGTTCACTCTCCCTCCGTTAGAGGTCAATGCTCTGGAACAGGACGTCTGGAACCAGGCAAGGGAGGACATGATTGACCCATTGAGCTTGAAGGAAATGTTGGAGGGCATCCGAGACAAAGCTGATGTTCCACTCTCCGTCAGATCTTTGAGGTTCCTCATGTTGGACCCACAAGACACGGAGGCTTTTGTGAACCTTCATAAGGCGCAGCCAATACGAAGACAGACTGTTATTACATGCATCGGCACCCTGAAGAAGAACATGGCTGATGAGGATGCAGTCAGCTGTCTGGTTATTGGCACTGAGAGTAAAGATGTCTATATCCTGGACCCTGAGGCCTTCACCATCCTCTCGAAGATGTCCGTCCCCAGTGCTCCCACTCAAATGGATGTGACTGGTCAGTTTGATGTGGAGTTCCGGATCACTGTGGCCTGTCGCAATGGGAATATCTACATCCTCCGCAGGGACTCCCCCAAGCCCAAGTACTGTATTGAGCTGTCTTCTCACCCTGTGGGGCTGGTGAGGATGGGGAAGAGTGTGGTGGTGGGATGTGCCCAGGAGACCCTGCAGGGCTTCACACAGAAGaggcctgtgtgtgtgtcttgtcctgtcctctgTGTCCAGGGGAAGAAGCTGTGGACGGCTTGCCTGCCAGCCCCTGTCACTACCATGGGCGTGATGGACCTCCCCACCAGGGGCTTCCAGGCTGTGTTAGTGGGCCTGGCTAACTGTGAGGTCCACCTCTACAGAGACAAAAACCTCATCAGCACCATCAAGACTCCGGATGTAGTGACCAGCATTTGTTTTGGGAGATATGGACGAGAAGACGGAACCCTTATAATGACCACCAAAGGAGGTGGTCTGATAGTAAAGATCCTGAAGAGGACAGCTGTGTTTGATGACAGGGACTCTGCCCCAGGTCCCCCTCTGGCACAAAGCATCCGCCTCAATATCCCCAAGAAGACCAAGCTGTACGTGGACCAAACCATGAGGGAACGGGAGAATGCTGTGGCAATGCACAGGGCCTTCCAGATGGACCTGAGTCGTCTGCGTCTGGCTGCAGCGAGGGCCTACGTTAAAGCCCTGGAGTCCAGCCTTACACCCATGTCCTCCAGCCTGTCTGAGCCTCTCAAGATGAACGCAGTGATCCCCCTACTGGTTCCTGGGCTCAACTATCCTATTGACACATTTGTGGAGTGCCTGAGTGATAAAGGAATCTCTGACATCATTAAAGTGTTTGTGCTGCGAGAGGGCAAGAGTGCACCCCTGCTGACTGCCCATATCAACATGCCCGTCAGTGAGGGACTGGCACTcaactgagagagggagagcgagcgagcagcATCTTTAGGCCCTGGGCTGGCCTCTATGCTCTCACCCTGTGCTTCTAGCCCCCTCTAGTGGCAGGGCTGACTCGAGGTGACTGGGACGTTAACAGGATCAGCTTGTGTTGGCCCCAGAGGTGGTTAAAAGCCATGTGTAGCATACGTACGGTAGGACAGGAAGTAGGGCTATTTGTCCTTAGAGAGAACTCCATAGAGAGAAATGGGTTTATGATTGTATCACAGGATTTAAAATCCAAACGTAAGTGAACTTGTAAGCTGTGTGTTGGTGGATAGAGATGTCAGGACAATTATCGTAATTATGAATACAAGTGTATAaagtcattatatatatatatatctcagcaTTATTTATTGCTCTTTAAAGTTTGTTAAATAATTGCCGGGAAAAAAACAGATGTGCTGCTAATTTTTTAATGTTCAGATCATTCATTGCACTTTATTTTCAAAAATGAAAGCTAACAAAAATCCATACATTCCTGAGTTGTGCAGCAGTATCCAGAAAGAGTTGGCTTttcaaacaaatgtatttaataaaACCTTTAAATGACTTTTATTTTCA
>XM_036967301.1
GCAATCAAGCAAGCCAGCTAGCAAACGTTAGCAGGATATCAAGCAGGCCAACTTTGTtatcgctaacgttagctagctaatcgCATTAGCTAAAAAAAACTGGGAGAATCcatgtttccacataatttcaaccTCAAAACATCTATAtaatgacgttgaatcaacgtagAAAACTGAttagatttgcaaaaagtcaaacATTTAAGTGAATTTCGTCTTTTCACCCAACTTTGACCTAAATCTTATGATATAACGTTAGTGACCTGTTTTGTCGAATTCACATTCAACGAAATGTAAGTCAACACTAAGTTAGACGTTGAAATTACGTCTGTGCCCAGTAGCTCTGAGACCAGTAAATGGTTAGATGCACACTACGATCCAGTGGCCAATCTCTATACTTTTTCATCTTGCATTGCTCTTGCAGACCTGCATGGGGATGGTGAGAATAAGTTGGTGGTGGGGGACCTGGGAACTGGTTCATGCAACATGAAGCTGAAGGTGTACCGTGGAACTGGCCTGATGAGTGAGAACACGTTGCTCGATCTGCCCACTGGCTTGGTTTCTTTCCTCATGGACCAGCATGAGCCACGCACGCCTGCCATCGCTGTGGCTTCCGGCCCCTTCATCTATGTCTATAAAAACTTGCGGCCCTATTTCAAGTTCACTCTCCCTCCGTTAGAGGTCAATGCTCTGGAACAGGACGTCTGGAACCAGGCAAGGGAGGACATGATTGACCCATTGAGCTTGAAGGAAATGTTGGAGGGCATCCGAGACAAAGCTGATGTTCCACTCTCCGTCAGATCTTTGAGGTTCCTCATGTTGGACCCACAAGACACGGAGGCTTTTGTGAACCTTCATAAGGCGCAGCCAATACGAAGACAGACTGTTATTACATGCATCGGCACCCTGAAGAAGAACATGGCTGATGAGGATGCAGTCAGCTGTCTGGTTATTGGCACTGAGAGTAAAGATGTCTATATCCTGGACCCTGAGGCCTTCACCATCCTCTCGAAGATGTCCGTCCCCAGTGCTCCCACTCAAATGGATGTGACTGGTCAGTTTGATGTGGAGTTCCGGATCACTGTGGCCTGTCGCAATGGGAATATCTACATCCTCCGCAGGGACTCCCCCAAGCCCAAGTACTGTATTGAGCTGTCTTCTCACCCTGTGGGGCTGGTGAGGATGGGGAAGAGTGTGGTGGTGGGATGTGCCCAGGAGACCCTGCAGGGCTTCACACAGAAGaggcctgtgtgtgtgtcttgtcctgtcctctgTGTCCAGGGGAAGAAGCTGTGGACGGCTTGCCTGCCAGCCCCTGTCACTACCATGGGCGTGATGGACCTCCCCACCAGGGGCTTCCAGGCTGTGTTAGTGGGCCTGGCTAACTGTGAGGTCCACCTCTACAGAGACAAAAACCTCATCAGCACCATCAAGACTCCGGATGTAGTGACCAGCATTTGTTTTGGGAGATATGGACGAGAAGACGGAACCCTTATAATGACCACCAAAGGAGGTGGTCTGATAGTAAAGATCCTGAAGAGGACAGCTGTGTTTGATGACAGGGACTCTGCCCCAGGTCCCCCTCTGGCACAAAGCATCCGCCTCAATATCCCCAAGAAGACCAAGCTGTACGTGGACCAAACCATGAGGGAACGGGAGAATGCTGTGGCAATGCACAGGGCCTTCCAGATGGACCTGAGTCGTCTGCGTCTGGCTGCAGCGAGGGCCTACGTTAAAGCCCTGGAGTCCAGCCTTACACCCATGTCCTCCAGCCTGTCTGAGCCTCTCAAGATGAACGCAGTGGTGCAGGGCCTGGGCCCGTCCTTCAAGCTAACTCTGAACATCCAGAACACAGCCGCATGCCGTCCTGTCATGCACTTGGCCATCAGCTTTCTGTATGATGAGAGCCTGTATAGTATGAGGACAGCCTTCTTTAAGATCCCCCTACTGGTTCCTGGGCTCAACTATCCTATTGACACATTTGTGGAGTGCCTGAGTGATAAAGGAATCTCTGACATCATTAAAGTGTTTGTGCTGCGAGAGGGCAAGAGTGCACCCCTGCTGACTGCCCATATCAACATGCCCGTCAGTGAGGGACTGGCACTcaactgagagagggagagcgagcgagcagcATCTTTAGGCCCTGGGCTGGCCTCTATGCTCTCACCCTGTGCTTCTAGCCCCCTCTAGTGGCAGGGCTGACTCGAGGTGACTGGGACGTTAACAGGATCAGCTTGTGTTGGCCCCAGAGGTGGTTAAAAGCCATGTGTAGCATACGTACGGTAGGACAGGAAGTAGGGCTATTTGTCCTTAGAGAGAACTCCATAGAGAGAAATGGGTTTATGATTGTATCACAGGATTTAAAATCCAAACGTAAGTGA

Function

symbol description
bbs1 Predicted to enable patched binding activity and smoothened binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; melanosome transport; and morphogenesis of an epithelium. Predicted to be part of BBSome. Predicted to be active in axoneme; centrosome; and ciliary basal body. Is expressed in eye; kidney; and testis. Used to study Bardet-Biedl syndrome. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 1. Orthologous to human BBS1 (Bardet-Biedl syndrome 1).

NR:

description
Bardet-Biedl syndrome 1 protein isoform X2

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0033339 pectoral fin development biological_process

KEGG:

id description
K16746 BBS1; Bardet-Biedl syndrome 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591475.2 False 2155 mRNA 0.52 17 34156709 34163637
XM_036967299.1 False 2507 mRNA 0.49 17 34156709 34163950
XM_036967300.1 False 2372 mRNA 0.49 16 34156709 34163950
XM_036967301.1 True 2384 mRNA 0.50 17 34156929 34163637

Neighbor

gene id symbol gene type direction distance location
cfbl cfb coding upstream 1270 34145403 ~ 34155439 (+)
LOC110510125 LOC106563697 coding upstream 21156 34105921 ~ 34135553 (+)
LOC110510124 LOC106602987 coding upstream 67645 33845835 ~ 34089064 (+)
LOC118945288 LOC106563664 coding upstream 342118 33675566 ~ 33814591 (+)
rasgrp2 grp2 coding upstream 482542 33661997 ~ 33674167 (+)
pacs1a LOC106563701 coding downstream 14881 34178831 ~ 34195217 (+)
LOC110510132 rin1 coding downstream 63357 34227307 ~ 34236487 (+)
LOC110510134 LOC106563705 coding downstream 115662 34279612 ~ 34290554 (+)
LOC110509380 NA coding downstream 135935 34299885 ~ 34303347 (+)
LOC110510136 LOC106602966 coding downstream 165231 34329181 ~ 34335741 (+)
G2177301 NA non-coding upstream 60721 34084804 ~ 34095988 (+)
G2177149 NA non-coding upstream 307230 33849088 ~ 33849479 (+)
G2177134 NA non-coding upstream 334079 33822402 ~ 33822630 (+)
G2177132 NA non-coding upstream 335507 33820931 ~ 33821202 (+)
G2177128 NA non-coding upstream 343148 33813354 ~ 33813561 (+)
G2177340 NA non-coding downstream 32382 34196332 ~ 34196814 (+)
G2177365 NA non-coding downstream 86744 34250694 ~ 34250973 (+)
G2177367 NA non-coding downstream 88231 34252181 ~ 34252783 (+)
G2177368 NA non-coding downstream 88876 34252826 ~ 34253102 (+)
cxxc5a LOC106563628 other upstream 921174 33212994 ~ 33235535 (+)
LOC110509425 LOC106563572 other upstream 2030631 32115629 ~ 32150579 (+)
G2175413 NA other upstream 2118973 32037047 ~ 32037736 (+)
LOC110509422 LOC106563560 other upstream 2255473 31820484 ~ 31908546 (+)
G2177424 NA other downstream 195674 34359624 ~ 34460769 (+)
LOC110510159 LOC106563679 other downstream 638989 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 1341898 35505848 ~ 35507048 (+)
G2179418 NA other downstream 1687704 35851654 ~ 35856462 (+)

Expression


Co-expression Network