LOC118945288 (LOC106563664)


Basic Information

Item Value
gene id LOC118945288
gene name LOC106563664
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33675566 ~ 33814591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967714.1
ACGGGGATTGATGCTGCTACCTTCTGTGCGGCGTAGGAAGACAACCATTGTCTAATGCGGGGATGCAGGTGGATCGGCTGGGCTCATAACGGCATGTGAGTCTGAAGTCTGTCCTTCCGGAAGACGAAGAAGTCTGCAGCATATCACCTCCATGTAAATATTCAAAAGACTGCCCGGAACGTTGTCTTTCTATCGGGTGTTGGAGCACAGAATAATGCCCAGAGCAATGGGACACTGAGGAAGATGGCGCTTGCACCTGTTTCTGCTTGGCTCTGTGCCTAGCTAACTCCTggagactggactggactgcaGCTGGAAGGAGGCCAGGATATTTGGTTTATGAGTGAGGGGAAGAGGAACAGAGAACCTTGAATTAGTTTTGTATTTTTTCTGACCCAACTACCACACTTCAACATTCTACAACAATCACCACTTCACTTGGTTTTGTAAATGTACTAGTTCCTAGACGTATGTTCTAGGTCCTATATTCCTAAACCTAGGCTATATGCTAGTTCCTATATTCCTAAACCTAGGCTATATGCTAGTTCCTAGATTCCTAAACCTAGGCTATATGCTAGTTCCTAGATTCCTAAACTTAGGCTATGTGCTAGTTCCAAAATTCCCCAGTGTAAGCTACAGTATGTGCTAGTTCCTAGAGTCTTAAATGTTTATTGCTAGTACCTAGATTCTTAAATATTTAGTGCTAGTTCCTAGATTCTTAAATGTTTAGTGCTAGTACCTAGATTCTTAAATGTTTAGTGCTAGTTCCTAGATTCTTAAACGTTTAGTGCTAGTTCCTAGACTCTTAAATGTTTAGTGCTAGTTCCTAGATTCTTAAATGTTTAGTGCTAGTTCCTAGATTCTTAAATGTTTAGTGCTAGTTCCTAGACTCTTAAATGTTTAGTGCTAGTTCCTAGATTCTTAAATGTTTAGTGCTAGTTCCTAGATTCTTAAATGTTTAGTGCTAGTTCCTAGATTCTTAAATGTTTAGTGCTAGTTCCTAGACTCTTAAATGTTTAGTGCTAGTTCCTAGATTCCAAAACATATGGATTCTATGATATCACCAGAACGTTATGGTAGCCGCTTCTCTGGATAACAGGTGACACAATTCCCAATTTTTCCACTCAATGGAGAGGCTAAGAAGAGAATCAGGATAGAGAGGCAAAGCTAAAGAGAAGAATTTGAATCATATTATTGCTGTACACTTTAGGGAAAACACAACAACAGTGTAGACTGGAGATCATTTCGGCCTCTCTCCCAGCGGTAGTGGATTAAAAGCAACGAGACCTAGTTTGAGGGATTAGGGTCAGAAGTGGAAGATGATAAGCAGACAGGGGAGGTGTGAAGTTCGGGCCGTGTGGCCCCTGCTATTGACTGGGCTGCTGTTGACAGTCATGGCCACGGCCTTGGAGTACGAGGGAGTCCCTGGTCAGTGGGCACGGTACGGCCGCTGGGAAGCCAAGGCCACAGGCCAGCTGAGCTTCGCTCTGAAGACCAACATCAGCAAGGCCCTGGTGCTCTACCTGGACGACGGAGGGAACTGTGACTTCCTGGAGCTTCTGATCGCAGACGGCTGGCTGCATCTTCGCTTCACCATCCACTGTGCAGAGCCGGCCTCCCTGCACACGGAGACTCGTGTCAACGACCAGCGCTGGCACCGCGTGCTGCTCACCCGTAACtacagagagaccagcctggtggTTGACAACGAGGACAAGGTGGCCGAGGTCAAGTCCAAGAGAAGTGAGATGGTGGTGGCCAGTGACCTTTACGTAGGTGGCATTTCTCCAGATGTTCGCCTATCTGCCCTCACGTCCAGCACCGTCAAATACGAGCCACCCTTCCAGGGCCTGATCACCAACCTAAAGCTGGGGGAGACCCTCCCCGTGCTCCTGGATGGCCAGGGTGTTCAGAATGATTTGGAATACCTGTGCATTAAACAGAACCCCTGCAGCAACAGAGGCCTCTGCTCCATCCACCAGGGAGAGGTCCTCTGTGACTGCACCGACACTGGATACAAGGGAAACTACTGCCATGAAGTTATCCAGAAAGCAGTAGAAGGTCTGGCGCACTTGATGTTAAACCGCCAAGATGATTCGTGA
>TU2488446
AGGAAGACAACCATTGTCTAATGCGGGGATGCAGGTGGATCGGCTGGGCTCATAACGGCATGTGAGTCTGAAGTCTGTCCTTCCGGAAGACGAAGAAGTCTGCAGCATATCACCTCCATGTAAATATTCAAAAGACTGCCCGGAACGTTGTCTTTCTATCGGGTGTTGGAGCACAGAATAATGCCCAGAGCAATGGGACACTGAGGAAGATGGCGCTTGCACCTGTTTCTGCTTGGCTCTGTGCCTAGCTAACTCCTggagactggactggactgcaGCTGGAAGGAGGCCAGGATATTTGGTTTATGAGTGAGGGGAAGAGGAACAGAGAACCTTGAATTAGTTTTGTATTTTTTCTGACCCATATGCTAGTTCCTAGATTCCTAAACCTAGGCTATATGCTAGTTCCTAGATTCCTAAACTTAGGCTATGTGCTAGTTCCAAAATTCCCCAGTGTAAGCTACAGTATGTGCTAGTTCCTAGAGTCTTAAATGTTTATTGCTAGTACCTAGATTCTTAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967714.1 False 2102 mRNA 0.47 5 33675566 33814591
TU2488446 True 523 lncRNA 0.45 3 33675600 33740535

Neighbor

gene id symbol gene type direction distance location
rasgrp2 grp2 coding upstream 1399 33661997 ~ 33674167 (+)
LOC110510121 NA coding upstream 40178 33627367 ~ 33635388 (+)
epdl2 LOC106563665 coding upstream 61467 33611933 ~ 33614099 (+)
nrg2a LOC106563662 coding upstream 80810 33436489 ~ 33594756 (+)
cxxc5a LOC106563628 coding upstream 440148 33212994 ~ 33235535 (+)
LOC110510124 LOC106602987 coding downstream 31244 33845835 ~ 34089064 (+)
LOC110510125 LOC106563697 coding downstream 291330 34105921 ~ 34135553 (+)
cfbl cfb coding downstream 330812 34145403 ~ 34155439 (+)
bbs1 bbs1 coding downstream 342118 34156709 ~ 34163950 (+)
pacs1a LOC106563701 coding downstream 364240 34178831 ~ 34195217 (+)
G2177052 NA non-coding upstream 20799 33654149 ~ 33654767 (+)
G2177023 NA non-coding upstream 35214 33576457 ~ 33640352 (+)
G2177019 NA non-coding upstream 102688 33572622 ~ 33572878 (+)
G2177016 NA non-coding upstream 105642 33568830 ~ 33569924 (+)
G2177015 NA non-coding upstream 108447 33566876 ~ 33567119 (+)
G2177132 NA non-coding downstream 6340 33820931 ~ 33821202 (+)
G2177134 NA non-coding downstream 7811 33822402 ~ 33822630 (+)
G2177149 NA non-coding downstream 34497 33849088 ~ 33849479 (+)
G2177301 NA non-coding downstream 270213 34084804 ~ 34095988 (+)
G2177340 NA non-coding downstream 381741 34196332 ~ 34196814 (+)
LOC110509425 LOC106563572 other upstream 1549488 32115629 ~ 32150579 (+)
G2175413 NA other upstream 1637830 32037047 ~ 32037736 (+)
LOC110509422 LOC106563560 other upstream 1774330 31820484 ~ 31908546 (+)
G2175233 psmb6 other upstream 2064097 31610544 ~ 31611469 (+)
LOC110510132 rin1 other downstream 417065 34227307 ~ 34236487 (+)
G2177424 NA other downstream 545033 34359624 ~ 34460769 (+)
LOC110510159 LOC106563679 other downstream 988348 34784319 ~ 34825545 (+)
ndufa2 ndua2 other downstream 1691257 35505848 ~ 35507048 (+)
G2177095 NA non-coding downstream 2370 33742905 ~ 33743109 (+)
G2177098 NA non-coding downstream 4138 33744673 ~ 33744903 (+)
G2177111 NA non-coding downstream 25722 33766257 ~ 33767302 (+)
G2177112 NA non-coding downstream 27210 33767745 ~ 33769208 (+)
G2177116 NA non-coding downstream 38135 33778670 ~ 33782010 (+)

Expression


Co-expression Network