LOC110510201 (LOC106563753)


Basic Information

Item Value
gene id LOC110510201
gene name LOC106563753
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 36869593 ~ 36871603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591576.2
CGCAACGACCAGATTAAAGTAGGAACTTCAGGCTACCATCTGACCCTGGTTTCTTGGACTGCCGTCGTACGCGAGGGAACCATACATTCAAAACATTTTTCTTTCCTTGCACAAATACAAACTGTAGAGCGTGGCCAGGCATTGTTGGAGTCGCGGGCAACCTTGTGCGTACGCactaaaaacaaaacactgcaggATGCTACTTCTCCTGGTCATTCCGTCTGTGATTTCGATCGAACAGTGATGTTTCCACATAATGGGTCAACTGATTAGATGAAAATTACTACTTTGATCAAATTGCGCAATTTGCGACCCTCGCCTTGTGTATCTCTGCTTGGAATGCATGAGGAGAATGGGGAGGAACAGACGTGTCTATCCAGAATGGATATAACCCCAACAGCTTTTGCCGCATCGAACTCATCAGAGGATACTAATGGCACGAGTGCCCAAAGACCTCTGCCTCACTCCCAGAGCGTGGCCGTCTTCATCGTGTTCCTGGTCACCGTTATCATTCTGGTGACAATCGTAGGGAATGTACTTGTTGTGGTGGCCGTTTTCACCAGCCGCGCGCTCCGTGCGCCGCAGAATCTCTTCCTTGTCTCTTTGGCATCGGCAGATATATTAGTGGCCACCTTGGTCATCCCTTTCTCCCTCGCCAACGAGATCATGGGTTACTGGTACTTTGGGAGCACCTGGTGCGCCTTCTACTTGGCCCTTGACGTCCTCTTCTGCACGTCCTCCATAGTGCACCTCTGTGCCATAAGTCTGGACAGGTACTGGTCTGTAACCAAAGCTGTTAGCTACAATCGGAAGAGGACGCCCAGGCGTATTAAGTGTATGATCACCGTGGTCTGGGTCATATCAGCAGTCATCTCTTTTCCACCGTTACTTATGACCAAACACGACGAGCATGAGTGCTTGCTCAACAACGAAACATGGTATATTCTCTCGTCTTGTCTGGTATCATTTTTCGCCCCGGGTCTAATCATGATTCTGGTGTATTGTAAAATATATAAAGTGGCCAAGCAGCGCGCATCAACCGTGTTTGCAGCAAAGAAcgggacggagagacagccttcGCAGTCGGAGACGTGCTTCGTGCCCAGGAGGAAGTTTGAGGTGGAGAGCCCTAGCAGCCCCAGTTTAGGTGGCCACATGCGGAAAGGAGAGCTCGATGATATTGACCTGGAGGAGAGCTGCGTCGCCGACAGCAAACCCAAGAACTGTCTCTTCTCCAAGAGAGTGAAAGTGGAGGGGGCAAACACTTTCCCAAAACAGAGTTGTCGAGTGTCATGGGCTTCAAACCGCAACGCGAAGCTCTCTCAGGAGCAAAAGATTAGACAGATGTCACTGTCAAAGACCAAACTGGCGCAGATGCGTGAAAAGCGCTTTACGTTTGTCCTTGCAGTGGTGATGGGGGTGTTTGTACTCTGCTGGTTCCCATTCTTTTTTACCTACAGTCTGCACGCAATATGCAGAGATTGTTGCCCAATTCCGGATGCTCTCTTTAATCTGTTTTTCTGGATTggttactgtaacagttcagtgaacCCTATCATTTATACAATATTTAATCGCGATTTTCGGAGATCTTTCAAGAAGATCATATGCCAGACATCACACACATAGgcttacaaaaaaaatgtatctctctctatatgtgtgtgagtgtgggtaAGCTCTGTTGCGTTTAGTATCTGTACTTATGAGACGTGTAAAAAAGTGTTTGTAGAATACTGTGATAagattttaaataataataatttaatgtCATGTAAAAAATGGACTTCGAAATTAGTGAGTTTGTAACCGTCAGATGGTGTTTCTGTGGATTTAAATGCATCAGGTTGCAAACCTGcataatttatttaaaaacaaaGAATTCTGTATCCAATCTACATATTCGAGAAGCATGAGTCAGACTACACTGTTATGTTTCTCCATGTTGTTAATCACATTTAGCAGTGTTCTGTTATTAATACATTAAAGGGCTTTTGATGTAAAGAGGCAA

Function

NR:

description
alpha-2Db adrenergic receptor-like

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0006940 regulation of smooth muscle contraction biological_process
GO:0030168 platelet activation biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004938 alpha2-adrenergic receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591576.2 True 2011 mRNA 0.46 1 36869593 36871603

Neighbor

gene id symbol gene type direction distance location
LOC118945292 NA coding upstream 225442 36637911 ~ 36644151 (+)
LOC110510207 LOC106563759 coding upstream 234185 36614866 ~ 36635408 (+)
LOC118945346 NA coding upstream 369968 36487463 ~ 36499625 (+)
LOC118945345 NA coding upstream 414059 36451022 ~ 36455534 (+)
LOC110510213 NA coding upstream 419273 36447884 ~ 36450338 (+)
arl3l1 LOC106563754 coding downstream 176610 37048213 ~ 37051629 (+)
LOC110510196 LOC106563728 coding downstream 182070 37053673 ~ 37059512 (+)
LOC110510194 LOC106563726 coding downstream 202324 37073927 ~ 37211008 (+)
rs14 LOC100194652 coding downstream 345941 37217544 ~ 37220508 (+)
cd74b LOC100136155 coding downstream 360733 37232336 ~ 37235298 (+)
G2180291 NA non-coding upstream 37066 36832260 ~ 36832527 (+)
G2180292 NA non-coding upstream 40791 36828571 ~ 36828802 (+)
G2180278 NA non-coding upstream 62317 36807043 ~ 36807276 (+)
G2180273 NA non-coding upstream 67632 36801717 ~ 36801961 (+)
G2180245 LOC106563724 non-coding upstream 117726 36750583 ~ 36751867 (+)
G2180329 NA non-coding downstream 19651 36891254 ~ 36913230 (+)
G2180375 NA non-coding downstream 108795 36980398 ~ 36980686 (+)
G2180379 NA non-coding downstream 123558 36995161 ~ 36995361 (+)
G2180380 NA non-coding downstream 132057 37003660 ~ 37003876 (+)
G2180383 NA non-coding downstream 170883 37042486 ~ 37043106 (+)
G2180218 LOC106563757 other upstream 189296 36678571 ~ 36680297 (+)
G2179454 LOC106602907 other upstream 944562 35912490 ~ 35925031 (+)
G2179418 NA other upstream 1013131 35851654 ~ 35856462 (+)
ndufa2 ndua2 other upstream 1362714 35505848 ~ 35507048 (+)
LOC110510159 LOC106563679 other upstream 2044048 34784319 ~ 34825545 (+)
G2180378 NA other downstream 110743 36982346 ~ 36982614 (+)
G2180382 NA other downstream 170120 37041723 ~ 37042185 (+)
G2180811 NA other downstream 545814 37417417 ~ 37468092 (+)
G2180897 NA other downstream 788984 37660587 ~ 37662215 (+)
G2180928 NA other downstream 833545 37705148 ~ 37705729 (+)

Expression


Co-expression Network