rs14 (LOC100194652)


Basic Information

Item Value
gene id rs14
gene name LOC100194652
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 37217544 ~ 37220508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165056.2
CCTTTTCTGTTTCGGCTTTActagagacacacacagCTATGGCACCTCGCAAGGGTAAGGAAAAGAAGGAAGAACAGGTCATCGCCCTGGGACCTCAGGTTGCCGAAGGCGAGAATGTCTTTGGAGTCTGCCACATCTTTGCATCCTTCAATGACACCTTCGTTCATGTCACTGACCTCTCCGGCAAGGAAACTATCTGCCGTGTGACTGGTGGTATGAAGGTAAAGGCCGACAGAGACGAATCCTCCCCCTACGCTGCCATGTTGGCCGCCCAGGATGTGGCACAGAGGTGCAAGGAGCTGGGAATCACTGCCCTGCATATTAAGCTGAGGGCCACTGGCGGTAACAGAACCAAGACCCCTGGACCAGGAGCACAGTCTGCTCTTCGTGCCCTGGCTCGTTCTGGCATGAAAATCGGACGCATCGAGGATGTCACCCCTATTCCATCAGACAGCACCCGAAGAAAGGGAGGTCGTCGTGGGCGTCGTCTGTAAATGTGCGTTGAGTTTTTCACTCAATAAAAGGTTAATTCC

Function

NR:

description
40S ribosomal protein S14

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0048821 erythrocyte development biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0006417 regulation of translation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005730 nucleolus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0045182 translation regulator activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0048027 mRNA 5'-UTR binding molecular_function

KEGG:

id description
K02955 RP-S14e, RPS14; small subunit ribosomal protein S14e

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165056.2 True 533 mRNA 0.53 5 37217544 37220508

Neighbor

gene id symbol gene type direction distance location
LOC110510194 LOC106563726 coding upstream 6536 37073927 ~ 37211008 (+)
LOC110510196 LOC106563728 coding upstream 158032 37053673 ~ 37059512 (+)
arl3l1 LOC106563754 coding upstream 165915 37048213 ~ 37051629 (+)
LOC110510201 LOC106563753 coding upstream 345941 36869593 ~ 36871603 (+)
LOC118945292 NA coding upstream 573393 36637911 ~ 36644151 (+)
cd74b LOC100136155 coding downstream 11828 37232336 ~ 37235298 (+)
LOC110510192 LOC106563729 coding downstream 22566 37243074 ~ 37264474 (+)
LOC118945320 NA coding downstream 44251 37264759 ~ 37267070 (+)
LOC110510189 LOC106563733 coding downstream 50042 37270550 ~ 37276372 (+)
cdx1b LOC106563735 coding downstream 131481 37351989 ~ 37358604 (+)
G2180691 NA non-coding upstream 5399 37211940 ~ 37212145 (+)
G2180670 NA non-coding upstream 51458 37165732 ~ 37166086 (+)
G2180611 NA non-coding upstream 146058 37071260 ~ 37071486 (+)
G2180603 NA non-coding upstream 163894 37053446 ~ 37053650 (+)
G2180705 NA non-coding downstream 2416 37222924 ~ 37223329 (+)
G2180706 NA non-coding downstream 2855 37223363 ~ 37223583 (+)
G2180720 NA non-coding downstream 29165 37249673 ~ 37250305 (+)
G2180724 NA non-coding downstream 36915 37257423 ~ 37257751 (+)
G2180382 NA other upstream 175359 37041723 ~ 37042185 (+)
G2180378 NA other upstream 234930 36982346 ~ 36982614 (+)
G2180218 LOC106563757 other upstream 537247 36678571 ~ 36680297 (+)
G2179454 LOC106602907 other upstream 1292513 35912490 ~ 35925031 (+)
G2179418 NA other upstream 1361082 35851654 ~ 35856462 (+)
G2180811 NA other downstream 196909 37417417 ~ 37468092 (+)
G2180897 NA other downstream 440079 37660587 ~ 37662215 (+)
G2180928 NA other downstream 484640 37705148 ~ 37705729 (+)
G2181669 NA other downstream 953548 38174056 ~ 38184872 (+)
LOC110509461 uspl1 other downstream 1577049 38760853 ~ 38819031 (+)

Expression


Co-expression Network