LOC110521648 (LOC106584217)


Basic Information

Item Value
gene id LOC110521648
gene name LOC106584217
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27544152 ~ 27559964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599341.2
CATGCCCATTCTGACTTCACCAATGCTAAGCTAACCAGTTAGCTAGCGTGCAACGTCAGTGCTGACTAGTTTTTATGGAGTGAAGATGGCACCTTTTCCCGACGAGGTGGATGTTTTTACTGGTCCACATTGGCGAATGAAACAGTTGGTAGGACTTTACTGCGAGAAGCTGTCACAGACCAACTTCTCCAACAACAATGACTTCCGCTCATTTCTTCAGTCACTGTGTGCCACCTTCAAGGAGTTCAAGATGCACGAACAGATTGAAAACGAGTATATCATCGGCCTGTTGCAACAGCGCAGCTGCACTGTGTATAATGTGCACTCCGATAACAAGCTCTCAGAGATGTTGTCCCTGTTTGAGAAAGGCCTGAAAAGCGTTAAGAGCGAGTATGAGCAGCTGAACTATGCCCGGCAACTGAAAGAGCGACTGGAGGCATTCACACAGGACTTCTTACCccacatgaaggaggaggaagagGTGTTCCAGCCCATGCTGATGCAGTACTTCACATATGAGGAGCTGAAAGACCTCAAGAAGCAGGTGATGGCACAGCACTGTAGCCAGCAGCGATGGGACTGTGCAGCAGAAGTGCTGAAGGGGCTCAGTCTGTGGAGCCAGGCAGAGGAGCTGCACAAGGCCTTCAAGTATGCTGACCACGAGAAGACTGACGAGCTAGAGAAAGAGCTGTGCTCCACCCACATCTCCCAGCTACCTACAGAGATCCTGCTGCATCTGTTCCGCTACCTGGGTCCTGAGGACCTGTGTCACTGTGGCCAGGTGTCCTCAGCCTGGTCCGACCTGGCCAAGACCGGCTCTCTGTGGAGGCACCTCTACCCTGTACGCTGGGCCAGAGGGGATCACTATCGTGGCCCCCCAGCTGATCTGAATCAGGAACCGGATGAGGAGTGGGTGAAGAGTCTGCAGGATGAGGGCAAGGCCTACCAGGAGTGGGATGAGGATGCAGATGTGGATGAGTCTGATGAGACTTGTGAAGACTCATTGGCTATAAGCTCAGCTCAGAGGGAGAAGAAGCTACTGAATGAAATTATCCAGAACCTTCTGCCAGCTGTGGGTTCCTCTGTCAGGTCCATCGTTCTGGCCTACAGCTCTACGGTCTCCAGTAAGATGGTGCGTCAGATCCTTAGTCTCTGTCCTAATCTCACCCACCTGGACCTCACTCAGACTGATGTCACAGACTCCGCCTTTGACAGTTGGTCATCTCTGGGGGCATGTCCATCTCTTGAGCACCTGGACCTATCCGGCTGTGAGAAGATCACTGACCACACCCTGAAGAAGCTGTCCATTTCTCAGAAACGATCTGACCGGCAAGCCAAGCTTCTGAAGAGCCCGCCTCCGATTAGTCTGCTGGATGAGCGGATCCTCCATTTGATGGGGGGCAGCAAGCAGGCCCTGATCTTCAAGCAGCGTATGGGGACACGGTGCAGCAGCCCCTCCAGGGTCTGGGTCCTGGACCCTTCGGAGCTGGCCGACATAGAGGATGCAGCAGAGTGGAACCGCCGCGGGGGAGTGTCTACCCCTGAGGGGCGAGGCTTTGTGGCGACGAAGCCAGGAGGTTTGTGTTGCTGCAGGAGGAGTAGGAGGCGGGGCCTCAGGACAAGCTATAGCACCTCCTACTGGCAGCAGCAGTATGGGCTTGGGGAGGCCTGCTGTGGCCATTCAACCTGCTGCACTGGTGAGATGGCCCTGAGGACTTGTGGAGGGCTGCAGTGTTTGTCTTACACCACCAGGGGCAGTGCAGGGGCAGAGTTTTGGACTAAATGCTCCTCTGGGGGCCAGCGGTGCCTGGAGCTTTACAACAGAACTGATCAGTCAGACGCTCGACGCTCGCTGAGATTCCTCAGCCTCTCTGGATGCTATCGGGTTACAGACCTGGGTTTGAGggcgcTGTCTCAGCGTGGTGGTCTTCCTTTCCTGGAGCATCTGAACCTGTCTGGATGTCTCCTCATCACTGAGGTTgggctacaggagctggtgtcaGCCTGTCCTGCCCTCAATGATGAACACTTCTACTACTGCGACAACATCAAcgGTCCCCATGCTGATACGGCCAGCGGCTGCCAGAACCTGCAGTGTGGCTTCAGGGCCTGCTGCCGCTCTGGAGAGTGACCTTTGACCTAAGCTTACTTTCTATgaaacccccctcccccccatctgCACTTTAATCCTCACCAGGGAACATGCCATTTGTTGTATTTTGTCACTTCAGATAGTTTCTACATGAAATGTTAAGTAAAAAGTAGATTCCTGACATTTCTTGGAAACACTAATttagaaaataaaatatatgGGTGTTGGATGAAGTATCTGCAAATGTATATTCTGGTTCCTAATTTTTGTGGTTTTGAGAAggtgatttgttttacacttggTATACGTGAGCACCTAGTACTTGTTTCTGTACAACCGGTATCCTGTCGTTTCTGACTAGTTCCACCTCCTCTGCTCCTACTTGCTTGTTTTAGATCACCAATTTGCGATTACTGTAGTCTTACTTGGTTTATTGAAAATAGAGTAGTCAGAAACATCAGATTATTCACTGTTGTGATGTGAGGTCCCTTCATAGGAAAATAAGCACCCACTAAATGATTTATTACACACAGCTGACATTTTAAAATATTAATTTTTGTTGTAAATAGTGGTGATTCACGCGGTGGAAGATGCTGTTGCAGCGTAATGGGGTTTGTCAGTGACGGTTAAGAATCTGAGGGTGCTGCACATTTCACTAccagagaccacacacacacacacacacacacactcaacaaagTTTAAAGTGGTAAATTGGTTGTGGTCCTCTTAACAATTTATGTATattaataaaacaaatgtatgATAACGCTATTGAAGAGTTCCTTCATGTAGTGTGCCGCTCATGGTGAAGACTGGTTCTTATGCTGGCAAGTGGCAACCCATGTAAGTTAGATCAGGGGTTCCAACACCTTTTTTTTGTGTTGCTTTGAGACCCAGGTGTCTTGAGGCGCGACCCACCATTGAGCGGTGTGAAAACATACACTGGCCAAAGAATGAGTGAAACATTATTTTGGCAGGAAGGTTTAAAGGTAATATCTTGCAATTGTATACATTTTGGGATGGAGCTGAAACAACATTTTGCAGTTAcgataatttcctgcaattctaagcATTTTGACATGGCTAATTGTGTTCTTATGCTCTaacataacaaaatcaatgggagcCTGATTGTCTAGGTTTTATTTTGTTGATTGTAAGTTTTTAAAAGATAGTGGGCTATTAATAAATATATAGGTCACCCTGGTGGTCAGTTCACTGGTAGAATTGTCAGATGGGTACAGGCATTTCAGGAATAAAGAGTTATTGTGGTTTCTGGCTGCAGGTAATAAATACCCTTATGCAATATCTCTATCAACCTTTTAAATGTAATTCACAATGCTCCTTATCTTTTTCCTTTGTGGCTGGAAACATTTGATTGTTCTGATTtaatatttacttaagtattttccCTTTGTCACTGATCTTCACTGAATCAATGGTAAGGACTGTGAAATTCACCCACATTCACATAAGCACTCCCAGGGCAGAGGGTTACAAAACAATCTGAGATCTAGAATGACCAAATGGAGCCAATTTGAAAAGTAGTCCTACTCTGTGAAACCCACTGTGATTGCTATACGTAGCACATCCATTGTCAGGAGACATGGCCTGTTCGAACAATCTGCATGAGAAGTCGTATTGGTTATGTACAATTTCAAAAGCAGAACAATAAAATTAACTTGGGTTTAAAAAa

Function

NR:

description
F-box/LRR-repeat protein 5-like isoform X1

GO:

id name namespace
GO:0055072 iron ion homeostasis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K10271 FBXL5; F-box and leucine-rich repeat protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599341.2 True 3791 mRNA 0.48 11 27544152 27559964

Neighbor

gene id symbol gene type direction distance location
LOC110521645 LOC106584222 coding downstream 86589 27446045 ~ 27457563 (-)
LOC110521644 LOC106584218 coding downstream 116482 27356263 ~ 27427670 (-)
LOC110521643 cac3 coding downstream 291406 27249905 ~ 27252746 (-)
LOC100136211 LOC106584216 coding downstream 308807 27225499 ~ 27235345 (-)
LOC110522773 NA coding downstream 342030 27198322 ~ 27202122 (-)
LOC110521649 LOC106584220 coding upstream 2255 27562219 ~ 27565213 (-)
LOC110521652 NA coding upstream 125395 27685359 ~ 27799353 (-)
LOC110521657 LOC106584104 coding upstream 297170 27857134 ~ 27948108 (-)
LOC110521660 LOC106584108 coding upstream 413180 27973144 ~ 27983258 (-)
LOC110522776 LOC106584109 coding upstream 425553 27985517 ~ 27989064 (-)
G2219420 NA non-coding downstream 13477 27526107 ~ 27530675 (-)
G2219346 NA non-coding downstream 100508 27443263 ~ 27443644 (-)
G2218619 NA non-coding downstream 216839 27327104 ~ 27327313 (-)
G2218524 NA non-coding downstream 286981 27256915 ~ 27257171 (-)
G2219490 NA non-coding upstream 98911 27658875 ~ 27662316 (-)
G2219531 NA non-coding upstream 188418 27748382 ~ 27755005 (-)
G2219552 NA non-coding upstream 225286 27785250 ~ 27785613 (-)
G2219576 NA non-coding upstream 256534 27816498 ~ 27817067 (-)
G2219579 NA non-coding upstream 260082 27820046 ~ 27820281 (-)
LOC110521640 LOC106584214 other downstream 363764 27157549 ~ 27180815 (-)
G2218118 NA other downstream 653541 26888889 ~ 26890611 (-)
G2217824 NA other downstream 1202657 26268346 ~ 26341495 (-)
G2217805 prrc2c other downstream 1306754 26236685 ~ 26237398 (-)
G2217605 NA other downstream 1623907 25917354 ~ 25920245 (-)
G2219594 NA other upstream 284910 27844874 ~ 27845401 (-)
G2219602 NA other upstream 303440 27863404 ~ 27864068 (-)
lnx1 lnx1 other upstream 813332 28307617 ~ 28382340 (-)
G2221180 NA other upstream 1908679 29468643 ~ 29473675 (-)
G2223487 NA other upstream 3714756 31274720 ~ 31275143 (-)

Expression


Co-expression Network