LOC110521649 (LOC106584220)


Basic Information

Item Value
gene id LOC110521649
gene name LOC106584220
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27562219 ~ 27565213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599344.2
TTCAGATCGTTGCACTATACCGGAACCAGCCCTGACACACAAGATAAACATTCGTCTTGGCCACAATCTCTAAAATGGCTGAGTCTTGTTCATTATTTGGTGAAGAACAATTCACTTGTTCAATTTGTCTGGATCTACTGAAGGAGCCTGTGACCATTCCTTGTGGACACAGTTACTGCATGGGCTGTATAAAGGACTACTGGAGTCTAAATGACCAGACAGGTGTCTACAGCTGTCCTCAGTGTAGACAGATATTCACCACAAGGCCTGCTCTGAACAAAAATACCATGTTTACAGAGGTAGTGGAAAGACTGAAGAAGACTGAAGAACTCCAAGCTGACCCTTCTGTTCCTAGTTATGCTGAACCAGGGGATATTGTGTGTGATGTCTGTACTGGGAGAAAGCAGAAAGCCATCAAATCTTGTCTTCTGTGCTTGGCCTCGTACTGTGAAACACACCTCAAGCTTCATGCCAAGCTAAACCCAGGAAAACGACACAGGCTTGAGGAAGCCTCCATACAGCTACAGGAGAAGATCTGCTCCCAACATGacaaactgctggaggtttaCTGCCGCACCGATCAACGTTGTATCTGCTATGAGTGTTTGATGGGTGTACACAAAGGCCATGAAACCGTTTCAGCTGTAGCTGAAAGCACAGAAAAACAGAAAGAACTGAAGGAGGCACACAAGAAATCCAAGCAAGTAATcaagaggaaagagaaggagcTATTGCGGTTGAAGCAGGCCATGGAGTCTCTCACATACTCAGCACAGGTAGCTGTGGAAGACAGTGACAAGGTCTTTGATGAAATGATCCGCTCTGTTGAGAAGTGGCACTCTGATGTGAAAAGACTGATCAGATCACAGGAGAATGCTGCTGTGGGCCAGGCTGAAGAGCAGGTTGACCAGTTGCAAAAGGAGATTGCAGAGTTGAGGAGGAGAGATGCTGAGCTTGGGCAGTTGTCAAAAACAAAAGATTCTATTATTTTCCTCCAGAGCTGTCAATCAATCCTAGCCCTCCCTGGATGTGGAGACTCATGCAGCATCAATGTCAGCCAACAAGTGTCTTTTGAAGGCGTGAAGAAATCTGTGGCTGAACTGAAACAGCGATTGGAGGACATCTGCAAAGGGACCTTTGTAAAAATCTCTAAAAAAGGACTATATATCCCCGTTTCCACAGTACAGGATGTTCATATTCTGCAGGCATCAAATCCCAGTCCACCTCTACCCCAAGTAAAAGAAACGTTTGTGGAGAGTAAAGTACCAACAACAAGGGAGGAGTTTTTGAAATATGCCTGTCAGCTCACATTGGACCTAAACACCGCACATAAAAACCTCCTTCTCTCCAAAGACAACAAAGAGGCTGTATGGAAGGATGTGGCACTGCCTTATCCTGACCACCCAGAGAGATTTGTAAACAATGCTGTAGTACTGTGTAGAGAAGCTCTGTCAGGCCGCTGTTACTGGGAAGTTGAATGGAGTGGAGTACAGGTTGTTATGGGTGTTGCATATAAGGGGATAAACAGAAAGAAGTGTCCTAGTCATGATCATTTTGATTGAATTTTAAACTTTCATGAACAGACCTGGAGTTTGGATGTGTTTGGTCGCTGTGTTTGGGAGAATACTAAACAGACTAAACAAGTACCTTTTTGGCCTTCTAAGAAAATAGGGCTCTACTTGGATCACAAGGCTGGATCGCTAACGTTCTATAACATTACTGACACAATGACCCTCCTCTATAGAGTACAAACTACATTCACTCAACCACTCTATCCTGTTTTCTGGATAAAAGTACAGTCCGGGATGAAATTGTGCCGcatgaaataaatgaaaatgaTTATTATAAAAATAGGATGCTTTTTGAAATCCTCTTTTTACATTGAAAAGAAGTATGGGGGTTTGTCTGTTTGGGATTATAAACGGCACCCACTTCTAACGGCAATCATTTACACCAAATTATACAAATGATATGCTGTATGAGTAAGAAGGAAGTATACCAATTGCATACAagaatgaataaaaaataaatga

Function

NR:

description
tripartite motif-containing protein 16-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599344.2 True 2033 mRNA 0.43 7 27562219 27565213

Neighbor

gene id symbol gene type direction distance location
LOC110521648 LOC106584217 coding downstream 2255 27544152 ~ 27559964 (-)
LOC110521645 LOC106584222 coding downstream 104656 27446045 ~ 27457563 (-)
LOC110521644 LOC106584218 coding downstream 134549 27356263 ~ 27427670 (-)
LOC110521643 cac3 coding downstream 309473 27249905 ~ 27252746 (-)
LOC100136211 LOC106584216 coding downstream 326874 27225499 ~ 27235345 (-)
LOC110521652 NA coding upstream 120146 27685359 ~ 27799353 (-)
LOC110521657 LOC106584104 coding upstream 291921 27857134 ~ 27948108 (-)
LOC110521660 LOC106584108 coding upstream 407931 27973144 ~ 27983258 (-)
LOC110522776 LOC106584109 coding upstream 420304 27985517 ~ 27989064 (-)
LOC110521662 LOC106584112 coding upstream 467953 28033166 ~ 28051936 (-)
G2219420 NA non-coding downstream 31544 27526107 ~ 27530675 (-)
G2219346 NA non-coding downstream 118575 27443263 ~ 27443644 (-)
G2218619 NA non-coding downstream 234906 27327104 ~ 27327313 (-)
G2218524 NA non-coding downstream 305048 27256915 ~ 27257171 (-)
G2219490 NA non-coding upstream 93662 27658875 ~ 27662316 (-)
G2219531 NA non-coding upstream 183169 27748382 ~ 27755005 (-)
G2219552 NA non-coding upstream 220037 27785250 ~ 27785613 (-)
G2219576 NA non-coding upstream 251285 27816498 ~ 27817067 (-)
G2219579 NA non-coding upstream 254833 27820046 ~ 27820281 (-)
LOC110521640 LOC106584214 other downstream 381831 27157549 ~ 27180815 (-)
G2218118 NA other downstream 671608 26888889 ~ 26890611 (-)
G2217824 NA other downstream 1220724 26268346 ~ 26341495 (-)
G2217805 prrc2c other downstream 1324821 26236685 ~ 26237398 (-)
G2217605 NA other downstream 1641974 25917354 ~ 25920245 (-)
G2219594 NA other upstream 279661 27844874 ~ 27845401 (-)
G2219602 NA other upstream 298191 27863404 ~ 27864068 (-)
lnx1 lnx1 other upstream 808083 28307617 ~ 28382340 (-)
G2221180 NA other upstream 1903430 29468643 ~ 29473675 (-)
G2223487 NA other upstream 3709507 31274720 ~ 31275143 (-)

Expression


Co-expression Network