G1093


Basic Information

Item Value
gene id G1093
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3271013 ~ 3272231 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU1469
acatggACATCTTGGATGACATGGGGGTGAGTAAATTATCAGCAAaggtttttttaaagtgaactAATCCTTTAAATCAACTTATGTACATTGACAACGCAGCCCTAATCACAATCATAATTTGTTGGAAAACATTGTATTTATTAAGTTTCCTATTGATTTATCATAGAACTTGAAGTTAATGACTGAATGCATGGTGATGAGACCTATCATTCAATCTACATTTTATAGCGTCAGTTTCCTTCATCGTATGAAACTGCTCACCTGGACATGAACCTGAGCTCGGCTGATTAAGATTAGTGTCTCCTGTCCATCTTTCTTTTGCAAAACTTGAATACCACCACTGCTTACCTCTTATTGAATCTTTGGGTGCAGACTTAATTGAAGAGCCTCGTATAAACAGGGTGTGATGTTTAGGGAAACCAAAGAATACAGGCGCCATCATTTCTGCCAGAAGACTCACAGGGGGGCAACGAAGCTTTCATTGAGGACTGGCTAGATCCCTTCTGCattcagaaagaaaacaaaaagggcATACACCATAAATAATTATAACTGACAAAAATAATGAGACAAGAAATTAAAGTAACAAGAAAATAAGTGCAAAACAAGTTTCCCTGTGTTGCAGTGTAGCTGAATGTTTTTCAACAATTTGATTTACGGTAAAACACATACCAAATATTTCCAGCCAAGGTTTGATTCAATCTTCAGCATGCTTTTCCTGCCATTGTCTTGAAACTGTTTCACCTGTCACTCTCATTTGATGCATTTCCTGAGAGTCACAGGTCCTTTGAGTATCCTTATGGTTTCTGCTCAAATTCAGTGTCTGAAAAGGGCAGGaacaaaacaaacctttttaatcataataaagacaaaataagatTTAGAGACAACAGAGAAATGTGTAAAATATCTTCTAGAATCTGTTTACTTTACTAACCTTGAAAGAGACTCTCGGGTCTTAGCTGTGTCACCACCCTTAAACCTTAAACACATGCATCAGAAAACCACTGCAACAAAATCTCAGATGTCCTTCACTGACATTTTTATTGTCTTGAACATATTTTGACCTCCACACACTTGCTGCTAGTCAAATATATTGCTTTAAACAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1469 True 1115 lncRNA 0.39 2 3271013 3272231

Neighbor

gene id symbol gene type direction distance location
LOC120557788 LOC100703858,LOC102778772,LOC103375691,LOC101465362,LOC107082671 coding upstream 111721 3157203 ~ 3159292 (+)
LOC120557776 NA coding upstream 142963 3109591 ~ 3128050 (+)
tmem178 tmem178a,LOC102307988 coding upstream 293584 2938097 ~ 2977429 (+)
eif4a3 eif4a3 coding upstream 380008 2882923 ~ 2891005 (+)
LOC120561808 srf,LOC103372093 coding upstream 389893 2858504 ~ 2881120 (+)
LOC120550686 LOC106676715 coding downstream 92585 3364816 ~ 3373141 (+)
rrbp1b NA coding downstream 141194 3413425 ~ 3448493 (+)
LOC120555395 NA coding downstream 216112 3488343 ~ 3490010 (+)
LOC120562172 NA coding downstream 292491 3564722 ~ 3568010 (+)
psen2 psen2,LOC100710620 coding downstream 374793 3647024 ~ 3655642 (+)
G1045 NA non-coding upstream 135652 3096362 ~ 3135361 (+)
G959 NA non-coding upstream 187877 3082231 ~ 3083136 (+)
G973 NA non-coding upstream 225470 3044933 ~ 3045543 (+)
G969 NA non-coding upstream 278441 2992217 ~ 2992572 (+)
G960 NA non-coding upstream 279343 2983259 ~ 2991670 (+)
G1098 NA non-coding downstream 53384 3325615 ~ 3384416 (+)
LOC120551115 NA non-coding downstream 67264 3339495 ~ 3341743 (+)
G1145 NA non-coding downstream 127836 3400067 ~ 3400331 (+)
G1146 NA non-coding downstream 128673 3400904 ~ 3403698 (+)
G1156 NA non-coding downstream 163713 3435944 ~ 3442178 (+)
dzank1 NA other upstream 11255 3175601 ~ 3259758 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other upstream 113875 3128089 ~ 3157138 (+)
LOC120567073 sos1 other upstream 190823 2995029 ~ 3080190 (+)
LOC120567079 NA other upstream 199540 3068398 ~ 3071473 (+)
G879 NA other upstream 570038 2626243 ~ 2700975 (+)
LOC120555387 LOC106675676,LOC106675675 other downstream 195893 3468124 ~ 3480130 (+)
G1191 NA other downstream 224375 3496606 ~ 3499104 (+)
LOC120562910 NA other downstream 520515 3792746 ~ 3814570 (+)
pex6 pex6,LOC104944420,LOC104961583 other downstream 1136207 4408438 ~ 4436086 (+)
G1487 LOC103369331 other downstream 1182976 4455207 ~ 4460404 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G337674 NA non-coding CI01000119 null 1216613 ~ 1226896 (-)