LOC120550686 (LOC106676715)


Basic Information

Item Value
gene id LOC120550686
gene name LOC106676715
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3364816 ~ 3373141 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039787401.1
TAAGGACGATAACGGACCTGTCCTAGACTGAAGGAATGACTTTACCTAGCTACGCTGAAGGAATAAAACAGtggCCAAGATGTTGATAAAGGTAAAATGCGGAGGGACAAAGAAATATGTTAAAATGGAAGACGTCAGCTTCTCAGACTTTATCAGTGCAGTTCAGCAGAAGTTTCTCATACCAGAAAGTACACCACTAAAAGTCACAGATGAGCAAGGCATAGAGGTGGACGAGGATGTCTTTCCAGAACTTGCAACAGCCAaagaaatatgttttatcatcTACACTGAAAATGATGTTCCTGTCCTGCAGCGAGAAAGTGAAGGGCCTTCCTCTCCAAGTTTAACAGATACATTGTCAATCTCAAGCAGTCTAAGTAGCGACACAAGTGATGCTGGATTTCAAATGATTCAACCTGTCATGGAATTTACCCGTGCAAGAAATACTGTGGAGCAGATTCTCACTTCCAAGCCTGCAGGGATGACTGTGATCAAAGAGTATGAAGAGACTGGGAGTTTGAAAGATTCCACCAGGCGATTATTGGTGAACATCATTGTAGCTCACATGCATGAAAAGGAAGGGAGAGCTGTAAGTAAAGCAACGAAGGAGTTTCATGCCTTTGGGATTGTGTCGCTCTTCCCATTTTTGAAAGACCCATACTCAAAAAAGGGATATGAACATTTCTATGACATGCAGAGCAACAAAGGCTTTCTTGAGTGGCGTATAAAAACTGTGCAGCGTCAATCCAAAACCTCATCTGCATCCCGTAACAGAGTGGAGCTGAAAGGAGGTCCCACATCGTCAAGAACATCTGGATCCATAGATGACCAGCAAACAGGAGATGAATGTATGGAGGCCATGTCTCTTCTTCACCACATTACTGACCGTGACTTTGTCTTCCAGAAGATGAAAGAAACATTCCATTATCGGCAAAAGGTGCTCCATGACCCACAGCAATCGGCAGACATACTTCAAATGTTTCCTCGTTTCTTGGACACTAAGGGACTGATTTTGCAAGACTTCTTGATGATGTTTGGAGCAGAGACTGCTTCCAGGTTCCTGGAAAAATGGAACACCAGTTTTAAAGACAAAGTAATTCAAGAGGCCAGGACCCTCAGAGAGACGTCTCTCCTGaaaaaacagctgaaatctGCCCTGAATGAAGAATCTGACACTGCTGATGAGCCAGAGTGGGACAGCGACATGGCATCTCTTCTTGTATTGCTCCATCTGCTAACTCCTCAACCAGCTGGAAGGAAGCGGCCCAAAAAGATCAGTGTTGGAGAGGCAACTGATCATTTGGTTAAATTTCACAAGTCTTGCCACAGCCTTGAAGAACATCTCATGACGATCGAAGGAAACCCCCAGCCGTATCTGCTGGCCACGGGGACTTCAAAAGCACAGGTTTTCACCTTCTACATAGTCTTGGATAGAAAGCTTCTTCCATGTCAGTCTTCTACATCTCTGGGCGCATTTGATGAGCTGTTCAAGTCCCATTTTGTTTTCAGTGTGCAATATGATGATGCTCTGTCGAGCTTGTACAGATTCCTGCAGACTACTCTGTACAATATCGATATAGGGACAACAGAAGAAACTCCAAGAGTCAAAGAGTTAAGAGCAAAGCTGTTAAACAAGCACTAATTTGCTAAAGCAGCAAACATGTTCAGATGTATCCTTTGTGCGTCATCCTTTGATACAGTTTTACTTCTGTTCAGGCACCTCAAATTAATTCATGCAATGTATTCTGGGAAAAATTTGAGACTAAAATGTGGTCAAATAGGATGTTGCTTGCAATTTTCAAGTTATTCTGGATTTAGAAGACATCTAATTAAGATACATGATCCTACTGACAACACATGTGTACCTCATGAAACCCCTTCCAACTATGACACTCAACTGCACAATCATTCTCAGTGCTTAAATGATGAAACACCCTCTACTTCATCACAATGCCAAAATGTTGAAGCAGGCCCTTCACTGTCAACTCACAGCAAAGATACGTGTGCCTCCATCATAGCCAAACTTTTGGGAAGCGGTGTACCAAATACTGTAGTTCTTTCTACAATTGAAAATTTACAGGAATTTGTGGAAGATTTGCAGTCTAATATTCAGGACCAAGTATTGAACTTACTTCCAGCTGACAATCCCTCTAGATCAGCCGTAGAAGAGCTTTTTAAAAGTATGGACAACCCTTTTAGCCAGTTGAATACGGATAGCAAATGGAAGAAGTATTTCAGGGAAA

Function

NR:

description
uncharacterized protein LOC106676715

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039787401.1 True 2243 mRNA 0.42 10 3364816 3373141

Neighbor

gene id symbol gene type direction distance location
LOC120557788 LOC100703858,LOC102778772,LOC103375691,LOC101465362,LOC107082671 coding upstream 205524 3157203 ~ 3159292 (+)
LOC120557776 NA coding upstream 236766 3109591 ~ 3128050 (+)
tmem178 tmem178a,LOC102307988 coding upstream 387387 2938097 ~ 2977429 (+)
eif4a3 eif4a3 coding upstream 473811 2882923 ~ 2891005 (+)
LOC120561808 srf,LOC103372093 coding upstream 483696 2858504 ~ 2881120 (+)
rrbp1b NA coding downstream 40284 3413425 ~ 3448493 (+)
LOC120555395 NA coding downstream 115202 3488343 ~ 3490010 (+)
LOC120562172 NA coding downstream 191581 3564722 ~ 3568010 (+)
psen2 psen2,LOC100710620 coding downstream 273883 3647024 ~ 3655642 (+)
pgap4 NA coding downstream 871117 4244258 ~ 4247932 (+)
LOC120551115 NA non-coding upstream 23073 3339495 ~ 3341743 (+)
G1093 NA non-coding upstream 92585 3271013 ~ 3272231 (+)
G1045 NA non-coding upstream 229455 3096362 ~ 3135361 (+)
G959 NA non-coding upstream 281680 3082231 ~ 3083136 (+)
G973 NA non-coding upstream 319273 3044933 ~ 3045543 (+)
G1145 NA non-coding downstream 26926 3400067 ~ 3400331 (+)
G1146 NA non-coding downstream 27763 3400904 ~ 3403698 (+)
G1156 NA non-coding downstream 62803 3435944 ~ 3442178 (+)
G1189 NA non-coding downstream 118803 3491944 ~ 3494763 (+)
G1205 NA non-coding downstream 180608 3553749 ~ 3554040 (+)
dzank1 NA other upstream 105058 3175601 ~ 3259758 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other upstream 207678 3128089 ~ 3157138 (+)
LOC120567073 sos1 other upstream 284626 2995029 ~ 3080190 (+)
LOC120567079 NA other upstream 293343 3068398 ~ 3071473 (+)
G879 NA other upstream 663841 2626243 ~ 2700975 (+)
LOC120555387 LOC106675676,LOC106675675 other downstream 94983 3468124 ~ 3480130 (+)
G1191 NA other downstream 123465 3496606 ~ 3499104 (+)
LOC120562910 NA other downstream 419605 3792746 ~ 3814570 (+)
pex6 pex6,LOC104944420,LOC104961583 other downstream 1035297 4408438 ~ 4436086 (+)
G1487 LOC103369331 other downstream 1082066 4455207 ~ 4460404 (+)

Expression


Co-expression Network