rrbp1b


Basic Information

Item Value
gene id rrbp1b
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3413425 ~ 3448493 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805633.1
ATGGTGTTCGAGGGCTTCAAGGTCATCTGGGTGCTCGCATTGCCCTCCCTGCCACCTGTGTCCAGAAGGAGATCGTCATACAGGGAGGCACTGGCGCAGCAGCCTGAACGCCGCCCCCAGgcccacagaagaagaagaagtgttAGAAGAAGAACAAAGCCAAAAGAAGAAGCACCCGAAGCCTGTTCAGAAGCAGGAAGCGATGGCGGCGAGGAGCCAGAGGGGGCGCTGGCCTGTACCGAGCCAGAACCTGACCCCGAAcacgctgctgctgccgccgcgGAGCCTGAACCCAAACCTGCCACGCCTGAACCGGAGCCAGAACCCAAACCTGCCACGCCTGAACCGGAGCCAGAACCCACCGTGGTCACCGCCACCGCCGTGGAGTCTCCTCCAGCCTCGTCGccaaaggagaagaagaagaagaagtcagCTGTCGGTCAGTCAGCCAAGGTGGAGCTGTCTGCTGCGTTGGAAACCGTTGCTAAGGAAGTCCTGGTCATGGCCGTGGCGCCGGTGGGGGATGTTTCTCCGGTGAACGTCGTTTCTGAAGTCACCAAAGAACCGTCTGCGGGTAAAACTGAAGAACCCAAGGAGACCTCGAGCAAGAAGAAGAAGTCCAAGAACAAAGCGGAGCCAGTGAGCAACTCTGCAGACTCGTCCCTGCTGCTGCCGTACGGCGAACTGCTGTCCGCCGTGTCCACCATGACGCTCAGTGACCACGAGATGCACAAACTCACCGAGGTCCTGAACCAGAAGGCTGGAGTCCGCCACGAATCCTGGCAGCTGGCCTGTCAGAAAGGAGACCCGCTGTCCAATCTGAAGAAACAgctggaggagaaagagaagctgCTGACCGCCGAGCAGGAGAGCGCCGCCACCGCCAAGACTCGCCTCCGAGACATCAGCAAGGAACTTGGTGCAGAGAAATCCAAGACGGCGTCTTTGGATGCCCGTCTGAAGGCAGAGCTGAGTGCTCAGGTTCAGAAAGTCGACGCCATGCGGGCCAAAATGGAGGCAGCTAACCAGGAACACCTGAAACATACGCAGCAGCTCAACCAGAAGATCGGGAGTCTTCAGGACCAGTTGGAGAACGGTCCGAATGCTCAGCTGGCCCGACTGCAGCAGGAGAACTCCATCCTCCGAGACGCCTTGAACCAGGCAACCAGCCAGGCCGAGAGCAGGCAGAATGCGGAGCTGGCCCGTCTCAGGCAGGACTGCGTCCGTCTGGGTCGAGAGTTGACCGAGCGTACCGACGCGCTGCGGGCCGACGAAGAGCGCCGGAAGAGTCTGGAGGCCAAGATGGCCGCCGCCGAGCAAGAACTAGCCAAAGCCCAGCTGGCCCGTGAGGACACTGAGCGCGCTCTGCAGAAGCGACTGGAGGAAGTGCGTTTGGAGCTGAACGCATCAAAGCAGGAAGCTGCTGCCGTTAGCGAGCAGCAGGGGGCGCTGGAGTCCAGAGAGACTGAACTGCAGGAGCTCAAGGTCCAGCTGGAGAACCAGGCTGCAGTCCAGGTGGAGCGGTCGTCTGAAGTGGAGCAGCTGAAGAACAGTGTGCAGCGCAGAGACGAGCAGGTCGTCTCACTGGAGGCGGAGCTCACTCAGCTGAGGGCGGAGCTACAGCTGCTGACATCATCACAGTCACAGAGagtgaaggaggaagaagaagaagaagcagccgGTGAGCAGACGCAGAAAGATGGATCAGGAAGCGAGACAGAGTCCGAGCAGCCGTTTGAAAGTCTGGAGGAAGACTCTCAGCTGCTGCGTCTGGAGGAAGAACTGCACACGCTCAGAGACGAGCTGCAGCAGGCTCGTAACCACGGCAACGAGCTGCAGGACAAAATGGCGACGCTTTCGGCGGAGGAGCGTCAGAGCGAGCAGCGAGAGGCAGAGCTTAAAGCAGCGCTGGCTGAAGCCGAGTCCAGGTTTGCGTCTCTGCGTCTGGACTTCCAGGCGTCGCTGCAGGTTCTGTTTCCCGGCGTCTCTGTGGAGGCGGAGAAGAGCGACTGGCTCGAGCTTCTTACTCAGAAAGTTCAGGAGAGAAAAGGTGAAACAGAGAGCGCTCACTCTGAGCTGCAGTCGAGGCTGACGGAGGCTGACAGGAGACAGACTGAACTGCAGACGGAGTTGGATCAGAACCGGAAGCTGCTGCAGGAAACGGAGGCGGAGCTTCACGCTCTGCAGCGACgctctgaagaagaagaaaacgtCTGGAAGAACAAACTGTCCGAAACCGAACAGCAGAAACAAACAGTTCTGGATCAGCTGACGCTGCTGCAGGACGAAGTGCAGTCGAAGACGTCGGAGACAGAAAACACTCAGCagCTGAAAGAACAGCTGATGTTGTTGGAGGCTCAGCTGGAGAAACAGCTGGAGGACGCCAGCGTCTCGCAGAACTGCTGCGAGGAGCTTGCTCAGTTGCGGTCTCAGATGCAGCAGATGTCCGTCCGGCTGCAGGCGGAGCAGGAGCAGCGACAGCAGCTGGACGCACAGCTGgagcaggcTCGACGGGACGTGttggagctgcagcagcaggcGGAGGCTGATCAGAGATCTGCTGCTGCGCCCGAGGAAGAGACGGTCCAGGTGCAGGAAGAGACGGTCCAGGTGCAGGACGAGACGGTCCAGGTGCAGGAAGAGACGGCCCAGGTGCAGGACGAGACGGTCCAGGTGAAGGAAGAGACGCCAGTGTGAAATAAACTTCTCTTCCTTCATGTTTGTTGTTACAATGATTCCATGTAGTTTAAAGCTCCATCTCCACCGCTACGTGTTGGTTTTTAAGTGtttgagttttgagccaaaagttggcgtcagtgtcggtgttaaacaccagagcagggggaatgagagggggaaacaccagagaagagggaatgagagggaggaacaccagagcaggggaatgagagggggaaacgtagcagaagatattcctttttaaaccaaaacgtagcggcTGGAGATGCAGCCTGAAGTTCGGGCCTCAGCAGAGCGACAGAAACAGAAACCAATGTGTTGGACAGTGAACGCCTCGCTGCTGTTTTCCTGACTGATGCTCACTGTGACAAATAAACGTCTGACTCAAACTG

Function

NR:

description
ribosome-binding protein 1 isoform X1

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805633.1 True 3092 mRNA 0.58 24 3413425 3448493

Neighbor

gene id symbol gene type direction distance location
LOC120550686 LOC106676715 coding upstream 40284 3364816 ~ 3373141 (+)
LOC120557788 LOC100703858,LOC102778772,LOC103375691,LOC101465362,LOC107082671 coding upstream 254133 3157203 ~ 3159292 (+)
LOC120557776 NA coding upstream 285375 3109591 ~ 3128050 (+)
tmem178 tmem178a,LOC102307988 coding upstream 435996 2938097 ~ 2977429 (+)
eif4a3 eif4a3 coding upstream 522420 2882923 ~ 2891005 (+)
LOC120555395 NA coding downstream 39850 3488343 ~ 3490010 (+)
LOC120562172 NA coding downstream 116229 3564722 ~ 3568010 (+)
psen2 psen2,LOC100710620 coding downstream 198531 3647024 ~ 3655642 (+)
pgap4 NA coding downstream 795765 4244258 ~ 4247932 (+)
LOC120568266 NA coding downstream 804626 4253119 ~ 4269471 (+)
G1146 NA non-coding upstream 9727 3400904 ~ 3403698 (+)
G1145 NA non-coding upstream 13094 3400067 ~ 3400331 (+)
G1098 NA non-coding upstream 29009 3325615 ~ 3384416 (+)
LOC120551115 NA non-coding upstream 71682 3339495 ~ 3341743 (+)
G1093 NA non-coding upstream 141194 3271013 ~ 3272231 (+)
G1189 NA non-coding downstream 43451 3491944 ~ 3494763 (+)
G1205 NA non-coding downstream 105256 3553749 ~ 3554040 (+)
G1203 NA non-coding downstream 111808 3560301 ~ 3578867 (+)
G1207 NA non-coding downstream 112974 3561467 ~ 3579755 (+)
G1218 NA non-coding downstream 201058 3649551 ~ 3650138 (+)
dzank1 NA other upstream 153667 3175601 ~ 3259758 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other upstream 256287 3128089 ~ 3157138 (+)
LOC120567073 sos1 other upstream 333235 2995029 ~ 3080190 (+)
LOC120567079 NA other upstream 341952 3068398 ~ 3071473 (+)
G879 NA other upstream 712450 2626243 ~ 2700975 (+)
LOC120555387 LOC106675676,LOC106675675 other downstream 19631 3468124 ~ 3480130 (+)
G1191 NA other downstream 48113 3496606 ~ 3499104 (+)
LOC120562910 NA other downstream 344253 3792746 ~ 3814570 (+)
pex6 pex6,LOC104944420,LOC104961583 other downstream 959945 4408438 ~ 4436086 (+)
G1487 LOC103369331 other downstream 1006714 4455207 ~ 4460404 (+)

Expression


Co-expression Network