LOC120568418 (LOC106675372)


Basic Information

Item Value
gene id LOC120568418
gene name LOC106675372
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 4336702 ~ 4338765 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU1903
ccaggccccctccaggatccttgcgagagtgaagagctggtccgttgttccacgaccaggacggaatccgcattgttcctcctcaacctgaggttcgactatcggccgaaccctcctttccagcaccttggagtagactttaccagggaggctgagaagtgtgatacccctgtaattggcacacaccctctggtccccctttttaaaaagttgctAATATTTTGCTAATGTCTCTTCAGGCTCCCACCACCTACAATAACCCACCAGGGCCAGCCACACCCACCACCTCCACTAGGACGTCATACCGCTCGGGCTCCAGCACC
>XR_005640723.1
gatacccctgtaattggcacacaccctctggtccccctttttaaaaagttgctAATATTTTGCTAATGTCTCTTCAGGCTCCCACCACCTACAATAACCCACCAGGGCCAGCCACACCCACCACCTCCACTAGGACGTCATACCGCTCGGGCTCCAGCACCAGCGCTACCATACCTTTACCAACAACAGACTTTGCTCCAGTGACCTGTCTGTCAAATGACTACCATGGAAGACATCAGATTTCCAAAAAGGAGCTTGAACATGTTCTTTCACTGAAAACCACCTTTACAGAAGCGGCATctattttttcaatttcaagGCCAACTTTCTACAAGTTACTGCAAGACTATAATATCCCAACGTCAAAATTTAAGAGCATCAGTGATCAACAGTTGGATCTTGAAGTgtcacaaataaaaactgaacacCCAAATGTTGGAGAAGTGATGCTTATGGGGCATCTCCGCTCCAAAAACATTGTGGTTCAATGACAACGTGTAAGAGATTCACTGCGAAGGATGGACCCAATTGGTGTCCTAGCCAGGAGAAGAACAGCAATAGCTCGGCGAGTATACTCTGTCCCACATCCAAATTTCATATGGCATGTAGACGGAAACCATAAGTTGATTAGGTGGAAATTGGTTGTTCATGGAGCCATAGACAGCTACAGTAGGATGTTGATGTTTCTTCACTGCTCCAACAATAATCGTGCTGAAACTGTAAGAGACCTCTTTACTGCAGCTGTTGGACAGTTTGGCAGACCCCTGCACATCAGGACTGATCACGGAGGAGAGAACGTTCAGATTTGGGAAGACATGCATGCAAGCAGGGGGGAAGGCTCTGTCTTAACAGGAAGTTCTGTACACAACCAGAGGATCGAGCGTTTTAACCGAGACTTGAACAAAAACTGCAGCCATATTTATGCACCCATTTTTTATGAACTGGAATCCCTGGGTATCCTAGACATAGACAATGCAACAGacctattttgtctccattaTGTCTTTCTACCCAGAATCAACCGCACTTTGGAGGAATTCAAAGCTGGATTTAACAATAACTCTATGTCATCTGAAGGAAATAGAACACCAGTTCAGCTTTTTAGTCTGGACAATGATTTGCCTCATCTTCACAACCCAGAACTCTCAACAGCAGGGTTAGTTTTTTGTTCCTCACCAAACTCTCAAAGAGGATTTTCCCCATTGAATGACAGGGATTTGCAAGAACTGAATGATGCCATTAACCCTCTTCAAGATGACAACAACAATGGCAAAACATTGTTTCAGAGAACACAACAGTTTATTTTTGATAAACTTGTAAATGTGTGATCTTAGCATAACATGGACAACTAGGTAACATTAGCCTTATTGTACTTTCATAAGTACACTGTGAAACAAATATTGATGTTTTGTTGTGCTTCTTGAACTGCAAGATTTAAAGCCTCTTGCCAGCTTATACAGTCATGtta

Function

NR:

description
uncharacterized protein LOC106675372

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1903 False 323 lncRNA 0.68 2 4336702 4337193
XR_005640723.1 True 1468 lncRNA 0.42 3 4336864 4338765

Neighbor

gene id symbol gene type direction distance location
tpcn3 LOC103368820,LOC102314232 coding upstream 3802 4312607 ~ 4332900 (+)
LOC120568266 NA coding upstream 67231 4253119 ~ 4269471 (+)
pgap4 NA coding upstream 88770 4244258 ~ 4247932 (+)
psen2 psen2,LOC100710620 coding upstream 681060 3647024 ~ 3655642 (+)
LOC120562172 NA coding upstream 768692 3564722 ~ 3568010 (+)
rcor3 rcor3 coding downstream 160248 4499013 ~ 4517076 (+)
traf5 NA coding downstream 182334 4521099 ~ 4538660 (+)
zgc:172076 NA coding downstream 444588 4783353 ~ 4806707 (+)
LOC120563657 NA coding downstream 517921 4856686 ~ 4939470 (+)
LOC120563603 stxbp6 coding downstream 608893 4947658 ~ 4949112 (+)
G1367 NA non-coding upstream 1111 4335367 ~ 4335591 (+)
G1363 NA non-coding upstream 82016 4254343 ~ 4254686 (+)
G1361 NA non-coding upstream 85229 4248069 ~ 4251473 (+)
G1360 NA non-coding upstream 96964 4239243 ~ 4239738 (+)
G1324 NA non-coding upstream 218536 3883301 ~ 4118166 (+)
G1383 NA non-coding downstream 81697 4420462 ~ 4424254 (+)
G1385 NA non-coding downstream 105019 4443784 ~ 4450576 (+)
G1489 NA non-coding downstream 131041 4469806 ~ 4470109 (+)
G1493 NA non-coding downstream 181407 4520172 ~ 4520486 (+)
LOC120563678 NA non-coding downstream 369439 4708204 ~ 4710879 (+)
LOC120562910 NA other upstream 522132 3792746 ~ 3814570 (+)
G1191 NA other upstream 837598 3496606 ~ 3499104 (+)
LOC120555387 LOC106675676,LOC106675675 other upstream 856572 3468124 ~ 3480130 (+)
dzank1 NA other upstream 1076944 3175601 ~ 3259758 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other upstream 1179564 3128089 ~ 3157138 (+)
pex6 pex6,LOC104944420,LOC104961583 other downstream 69673 4408438 ~ 4436086 (+)
G1487 LOC103369331 other downstream 116442 4455207 ~ 4460404 (+)
G1600 NA other downstream 639018 4977783 ~ 5038714 (+)
G1756 NA other downstream 879303 5218068 ~ 5222744 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other downstream 896581 5235346 ~ 5327917 (+)

Expression


Co-expression Network