LOC120555899


Basic Information

Item Value
gene id LOC120555899
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12792805 ~ 12796367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU5353
aagaagaagaactggATTGACTGAAAGTAAGGAGAGCAAAATAGAGTGGGAGGAATGAGCACACAGCCCATGGCATTACAGTCATAAGATCAGGGCTTTCTGTTAGCCTATagttcctttttctctctttcactcagCACTACGGATGTGGCGAGGGCGGAACCGCAAACACTGCTAGCTGCTTGTGCTTATTTTGCGGCCTGCTGCGAGCAAACAGAAACAGCTAGAAGAAGAATGTCGGTTGAATCATCGCCTCCTTAGAGACTTCATGCTGTTTAACCTTACAGGGTTCGTTATTAGAAGAATGTCCTCCGCTCTTCCCCGTCATGTCATTTGGGAGTCCGAGGGGCTGGTGGCCCACCTTAACCCCCGGCCCTGGACCCCGGGCTCTGTTATCCTGGAGCGCAGCACCCCCGGCAGCCTCGGAGGCAGCATCTTCCACCTGGAGAAGCAGGAGTTCTTATCCTGGCTGTTAGGGGCCAGAGCTGTTGCAGAGCTGCTGTGTGACAGGCTGGGGGTTAGGAGGTGTGCGCTGGTCAGCAGACCCCACAGAGACAGACCGGCCCAGGTGAGGGTCTCTTTGACCAGTTGATGGACTGGTTGGCTGTACTGTTCATGGAAAGAGAGCCTTTAGGATTTAAAGGATCCGTGTCCTCCCTCTACATGGTCTGGATGCAGAGTGGCGCCCCCACCTGGCAGGAGAAGAAGAGCACAACGCCCACGACCCGGGCTACTGCACCTCGAAGACCGCTGGCCGATGGACTAACTCCAGCCTGACTGAAATCCAGACCAAGATTCGAGCTAAGCTCCCCATCCCTGACGCCCCGCCCGATCTGTCTTTCCTCGGGGACAACCCGGCTCATCCCGGCCTGTTTTCGCGCATCGTTCGCGGGGAGGAGGAACAGTGGCGGGTGTGGGAGGATGAGGGTCACGTGGCCTTCCTCACTCCTTTCCCTAACTCCCCCGGCTTCACCGTGCTGGTCCCACGCCGACCGCTGACCTCTGATATTTTCCGACTAGAAAAAGAGGACTACGAGGGACTGGTGCTGGCAACCTGGGAGGTGTCGAGGCTTGTGCAGGAGGCGCTGGGCGCCTGGGGGATGGGGCTTATTTTTGAGGGCTTCGAGATTGACTACGCTCACGCCAAGTTGATACCACTGCTTCTAGCGTCCTCATCAAGGACGGGAAATGAGACCACTAAACCACCACCTCCCCAGTTTTACCCCACTTATCCTGGATATGTGACCTCAGAAGATGGACCTGAAGCCAGCCTGGAAAGTCTGAAGGAACTGCACGTTAAAATGACTCCGATTTAATGCTGTTACCTATAGTTTGATTCCTACTCACCTGCCTAACCTGTAATAGTTTTAGCTGTGAATGGAATTCCTCTTTGCTTCTGAATTAACAAGAATTGtgtaaaataacacatttaagaatgaaggagatgtgatgtaTTTTGGTGTATGTGAGGTCATTGACATAATTTTTTGTACTGTCACAGTCGTTAATCTACCACAGTCTTGTCTTTGACTAATCATGATTGGACAGGGATGCTGCTTTGCACCAGCAAGCATGATCTGTAGGCATTAGATTAGATATCCAAAATTTGACACATTTATGAAAGATAAAGAAATCAAACATCTAATCATGGTTAAGCTGCATAATTTACAAATTAGACCAGGTCTAAAGtttgtaaatatgaatgtgcTTCTGTCAATTACAAAGGAAGTTGCAAGTGTAATAAACTGACTAAAAGCGGATGTTTTTGTAAGGAGACTGTATGTCC
>XM_039795084.1
agaactggATTGACTGAAACACTACGGATGTGGCGAGGGCGGAACCGCAAACACTGCTAGCTGCTTGTGCTTATTTTGCGGCCTGCTGCGAGCAAACAGAAACAGCTAGAAGAAGAATGTCGGTTGAATCATCGCCTCCTTAGAGACTTCATGCTGTTTAACCTTACAGGGTTCGTTATTAGAAGAATGTCCTCCGCTCTTCCCCGTCATGTCATTTGGGAGTCCGAGGGGCTGGTGGCCCACCTTAACCCCCGGCCCTGGACCCCGGGCTCTGTTATCCTGGAGCGCAGCACCCCCGGCAGCCTCGGAGGCAGCATCTTCCACCTGGAGAAGCAGGAGTTCTTATCCTGGCTGTTAGGGGCCAGAGCTGTTGCAGAGCTGCTGTGTGACAGGCTGGGGGTTAGGAGGTGTGCGCTGGTCAGCAGACCCCACAGAGACAGACCGGCCCAGATCCGTGTCCTCCCTCTACATGGTCTGGATGCAGAGTGGCGCCCCCACCTGGCAGGAGAAGAAGAGCACAACGCCCACGACCCGGGCTACTGCACCTCGAAGACCGCTGGCCGATGGACTAACTCCAGCCTGACTGAAATCCAGACCAAGATTCGAGCTAAGCTCCCCATCCCTGACGCCCCGCCCGATCTGTCTTTCCTCGGGGACAACCCGGCTCATCCCGGCCTGTTTTCGCGCATCGTTCGCGGGGAGGAGGAACAGTGGCGGGTGTGGGAGGATGAGGGTCACGTGGCCTTCCTCACTCCTTTCCCTAACTCCCCCGGCTTCACCGTGCTGGTCCCACGCCGACCGCTGACCTCTGATATTTTCCGACTAGAAAAAGAGGACTACGAGGGACTGGTGCTGGCAACCTGGGAGGTGTCGAGGCTTGTGCAGGAGGCGCTGGGCGCCTGGGGGATGGGGCTTATTTTTGAGGGCTTCGAGATTGACTACGCTCACGCCAAGTTGATACCACTGCTTCTAGCGTCCTCATCAAGGACGGGAAATGAGACCACTAAACCACCACCTCCCCAGTTTTACCCCACTTATCCTGGATATGTGACCTCAGAAGATGGACCTGAAGCCAGCCTGGAAAGTCTGAAGGAACTGCACGTTAAAATGACTCCGATTTAATGCTGTTACCTATAGTTTGATTCCTACTCACCTGCCTAACCTGTAATAGTTTTAGCTGTGAATGGAATTCCTCTTTGCTTCTGAATTAACAAGAATTGtgtaaaataacacatttaagaatgaaggagatgtgatgtaTTTTGGTGTATGTGAGGTCATTGACATAATTTTTTGTACTGTCACAGTCGTTAATCTACCACAGTCTTGTCTTTGACTAATCATGATTGGACAGGGATGCTGCTTTGCACCAGCAAGCATGATCTGTAGGCATTAGATTAGATATCCAAAATTTGACACATTTATGAAAGATAAAGAAATCAAACATCTAATCATGGTTAAGCTGCATAATTTACAAATTAGACCAGGTCTAAAGtttgtaaatatgaatgtgcTTCTGTCAATTACAAAGGAAGTTGCAAGTGTAATAAACTGACTAAAAGCGGA

Function

GO: NA

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU5353 True 1786 TUCP 0.50 3 12792805 12796367
XM_039795084.1 False 1566 mRNA 0.51 4 12792812 12796341

Neighbor

gene id symbol gene type direction distance location
atf4a NA coding upstream 7908 12779976 ~ 12784897 (+)
LOC120555869 NA coding upstream 18965 12762314 ~ 12773840 (+)
rps19bp1 rps19bp1 coding upstream 31211 12756472 ~ 12761594 (+)
tab1 NA coding upstream 285650 12491384 ~ 12507155 (+)
LOC120564266 syngr1,LOC103356703 coding upstream 304152 12454147 ~ 12488653 (+)
si:ch211-79m20.1 pdgfb coding downstream 81418 12877785 ~ 12894214 (+)
pvalb7 pvalb,LOC104925451,LOC103368011 coding downstream 142887 12939254 ~ 12977544 (+)
trnai-uau NA coding downstream 183648 12980015 ~ 12980108 (+)
LOC120567194 LOC100691221,LOC102314620,LOC103359246,LOC101486573,LOC102208321 coding downstream 435950 13232317 ~ 13243624 (+)
LOC120558382 NA coding downstream 681486 13477853 ~ 13483849 (+)
G3887 NA non-coding upstream 63536 12704191 ~ 12729269 (+)
G3880 NA non-coding upstream 102356 12688949 ~ 12690449 (+)
G3806 NA non-coding upstream 365317 12426610 ~ 12427488 (+)
LOC120562905 NA non-coding upstream 565805 12226074 ~ 12227000 (+)
G3748 LOC104951079 non-coding upstream 615190 12175131 ~ 12177615 (+)
G3903 NA non-coding downstream 424 12796791 ~ 12797436 (+)
G3905 NA non-coding downstream 1471 12797838 ~ 12798186 (+)
G3906 NA non-coding downstream 8187 12804554 ~ 12808598 (+)
G3913 NA non-coding downstream 35555 12831922 ~ 12832360 (+)
G3959 nptxr non-coding downstream 188421 12984788 ~ 13047437 (+)
trnar-ccg NA other upstream 106733 12686000 ~ 12686072 (+)
mgat3b mgat3,LOC103374702 other upstream 189683 12530629 ~ 12603122 (+)
LOC120565807 LOC103356709,LOC104962452,LOC102300655 other upstream 470596 12304710 ~ 12322209 (+)
LOC120567030 rac2,LOC102196216,LOC108231305,LOC107391413 other upstream 528801 12196646 ~ 12264004 (+)
LOC120559244 NA other upstream 2333517 10320573 ~ 10459288 (+)
pla2g6 pla2g6 other downstream 276457 13072824 ~ 13090481 (+)
G4009 NA other downstream 310931 13107298 ~ 13138816 (+)
LOC120568539 LOC102799075,LOC104938193,LOC103359245,LOC101486854,LOC102208768 other downstream 387594 13183961 ~ 13272174 (+)
LOC120558420 LOC103367025 other downstream 725588 13521955 ~ 13536249 (+)
LOC120558516 LOC107097044,LOC102212093,LOC108246147,LOC105919341 other downstream 1102111 13898478 ~ 13901687 (+)

Expression


Co-expression Network