LOC120567030 (rac2,LOC102196216,LOC108231305,LOC107391413)


Basic Information

Item Value
gene id LOC120567030
gene name rac2,LOC102196216,LOC108231305,LOC107391413
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12196646 ~ 12264004 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU5171
CGTCTCTGAACCTTCCTCTCCGAGTCTGTTTCTGTCACAGTGAAGAGCACAGACGAAGCTGAGCGGAACAGGATGCAGGCTATCAAATGTGTGGTCGTGGGAGATGGAGCGGTGGGAAAAACATGTCTTCTCATCAGCTACACAACCAATGCCTTCCCCGGGGAGTACATTCCTACTGTGTTTGACTACTACTCAGCTAATGTGATGGTGGACAGCAAGCCAGTCAACCTGGGCCTCTGGGATACAGCTGGACAAGAAGACTACGACAGGCTCCGCCCACTGTCCTACCCACAGACgGATGTTTTCCTCATCTGTTTCTCCCTGGTGAGCCCAGCGTCCTATGATAATGTCAGAACTAAGGTAAGTCTTATATCTGTGGTACATTATTAT
>TU5173
CAAAAGCATGCAAAGGACATAAAATCCCAGTGTAGCCAAATCTATCATTGAATATCTCTCTCATCTCATTGTCTCTTCTTTAGGATGTTTTCCTCATCTGTTTCTCCCTGGTGAGCCCAGCGTCCTACGAGAACGTCAGAGCTAAGTGGTACCCTGAGGTTCGCCACCACTGCCCCTCCACACCCATCATCCTGGTGGGCACCAAGCTGGATCTGAGGGACGAGAAGGATACCATTGAGAAGCTGAAGGAAAAGAAGCTGGCGCCAATCACCTACCCTCAGGGCCTGGCTCTGGCTAAAGAGATAGATTCAGTGAAGTACCTGGAGTGCTCGGCTTTGACCCAGCGCGGTCTGAAGACGGTGTTTGATGAGGCCATCCGAGCCGTTCTCTGCCCCCAGCCCACTAAGGTCAAGAAGAAGCCCTGCTCCCTGCTGTAAATGATTCATGCAGGAccagaaagaacagagaaagagattcAGACTGATGACCCCTCGTTAAAGAAGACCTTTTGAAAGTTCTGTTATGTTTCTAATAGTAAACTACAACTAGATTTCCACTGGTAAAACAAATAATGATTTTGCAGTTATAATAAAATGGCACCAAACATTTCTGTGCTGCATACTCTGAGACAgatttttaaaatgcattataGACGCTCTACCAGGCACAATTTTCTACTGCCCCAGTTCGCACTATAGATTTGATCTGTTGGCTTTAATGAAAGACCACGAGCAGAATGCTACTATATTATGTTTCCATGTACCAACATTCCTTCAGACCAGACTGCGTCTCACTGCCCTTTTGGGGTCAacaataggctacatacagGTGCTTTTGTACAGCTTCAAATGATATTTGTTAGTGCAAAGATACTGTTGCTATAATATAATGTCTTACCACTGTTGTTTTGAGAGTCACgaacaataataaaaacacaaggaTCAGGGATGTAGTTTTGAACAAGGTTGTATTTTAATAAAAGTTATgaacaaatgtattatttgttgtgatgtcaaaataaa
>TU5174
CAAAAGCATGCAAAGGACATAAAATCCCAGTGTAGCCAAATCTATCATTGAATATCTCTCTCATCTCATTGTCTCTTCTTTAGGATGTTTTCCTCATCTGTTTCTCCCTGGTGAGCCCAGCGTCCTACGAGAACGTCAGAGCTAAGTGGTACCCTGAGGTTCGCCACCACTGCCCCTCCACACCCATCATCCTGGTGGGCACCAAGCTGGATCTGAGGGACGAGAAGGATACCATTGAGAAGCTGAAGGAAAAGAAGCTGGCGCCAATCACCTACCCTCAGGGCCTGGCTCTGGCTAAAGAGATAGATTCAGTGAAGTACCTGGAGTGCTCGGCTTTGACCCAGCGCGGTCTGAAGACGGTGTTTGATGAGGCCATCCGAGCCGTTCTCTGCCCCCAGCCCACTAAGGTCAAGAAGAAGCCCTGCTCCCTGCTGTAAATGATTCATGCAGGAccagaaagaacagagaaagagattcAGACTGATGACCCCTCGTTAAAGAAGACCTTTTGAAAGTTCTGTTATGTTTCTAATAGAAAACTACAACTAGATTTCCACtggttaaaacaaataatgatTTTGCAGTTATAATAAAATGGCACCAAACATTTCTGTGCTGCATACTCTGAGACtgatttttaaaatgcattataGACGCTCTACCAGGCACAATTTTCTACTGCCCCAGTTCGCACTATAGATTTGATCTGTTGGCTTTAATGTAAGACCACGAGCAGAATGCTACTATATTATGTTTCCATGTACCAACATACCTTCAGACCAGACTGCGTCTCACTGCCCTTTTGGGGTCAACAATAAGCTACATACAGGTGCTTTTGTACAGCTTCAAATGATATTTGTTAGTGCAAAGCTAGTGTTGCTATAATATAATGTCTTACCACTGTTGTTATGAGAGTCACgaacaataataaaaacacaaggaTCAGGGATGTAGTTTTGAACAAGGTTGTATTTTAATAAAAGTTATgaacaaatgtattat
>XM_039813815.1
TTTAGAGCGGTGGGAAAAACATGTCTTCTCATCAGCTACACAACCAATGCCTTCCCCGGGGAGTACATTCCTACTGTGTTTGACTACTACTCAGCTAATGTGATGGTGGACAGCAAGCCAGTCAACCTGGGCCTCTGGGATACAGCTGGACAAGAAGACTACGACAGGCTCCGCCCACTGTCCTACCCACAGACgGATGTTTTCCTCATCTGTTTCTCCCTGGTGAGCCCAGCGTCCTATGATAATGTCAGAACTAAGGTAAGTCTTATATCTGTGGTACATTATTATTTGGACCTTTTCACATATTCAGTGAAGTACCTGGAGTGCTCGGCTTTGACCCAGTGCTGTCTGAAGACGGTGTTTGATGAGGCCATCCGAGCCGTGCTCTGCCCCCAGCCCACTAAGGTCAAGAAGAAGCCCTGCTCCCTGCTGTAAATGATTCATGCAGGAccagaaagaacagagaaagagattcAGACTGATGACCCCTCGTTAAAGAAGACCTTTTGAAAGTTCTGTTATGTTTCTAATAGAAAACTACAACTAGATTTCCACtggttaaaacaaataatgatTTTGCAGTTATAATAAAATGGCACCAAACATTTCTGTGCTGCATACTCTGAGACtgatttttaaaatgcattataGACGCTCTACCAGGCACAATTTTCTACTGCCCCAGTTCGCACTATAGATTTGATCTGTTGGCTTTAATGTAAGACCACGAGCAGAATGCTACTATATTATGTTTCCATGTACCAACATACCTTCAGACCAGACTGCGTCTCACTGCCCTTTTGGGGTCAACAATAAGCTACATACAGGTGCTTTTGTACAGCTTCAAATGATATTTGTTAGTGCAAAGCTAGTGTTGCTATAATATAATGTCTTACCACTGTTGTTATGAGAGTCACgaacaataataaaaacacaaggaTCAGGGATGTAGTTTTGAACAAGGTTGTATTTTAATAAAAGTTATgaacaaatgtattatttgttgtgatgtcaaaataaaagacattttatcAAGTAAAA

Function

symbol description
rac2 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within several processes, including defense response to other organism; leukocyte chemotaxis; and regulation of neutrophil migration. Located in cytoplasm. Is expressed in neutrophil and thymus. Human ortholog(s) of this gene implicated in immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis; immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia; and immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemia. Orthologous to human RAC2 (Rac family small GTPase 2).

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5171 False 390 TUCP 0.34 4 12196646 12261491
TU5173 False 1022 lncRNA 0.55 4 12208735 12216036
TU5174 False 1002 lncRNA 0.39 5 12208735 12263963
XM_039813815.1 True 1041 mRNA 0.41 5 12249965 12264004

Neighbor

gene id symbol gene type direction distance location
fam83fb NA coding upstream 22864 12159302 ~ 12173782 (+)
grap2b NA coding upstream 40266 12147264 ~ 12156380 (+)
LOC120573162 NA coding upstream 60305 12131844 ~ 12136341 (+)
lgals2b LOC108231364 coding upstream 504575 11686978 ~ 11692071 (+)
LOC120569250 LOC103136458,LOC106522476,LOC103368092 coding upstream 700799 11189782 ~ 11495847 (+)
LOC120567046 LOC102300655,LOC103479325,LOC102220725,LOC106923894 coding downstream 26507 12290511 ~ 12291542 (+)
LOC120567022 cacng2,LOC100708132,LOC108230331 coding downstream 85906 12349910 ~ 12426349 (+)
LOC120564266 syngr1,LOC103356703 coding downstream 190143 12454147 ~ 12488653 (+)
tab1 NA coding downstream 227380 12491384 ~ 12507155 (+)
rps19bp1 rps19bp1 coding downstream 492468 12756472 ~ 12761594 (+)
G3748 LOC104951079 non-coding upstream 19031 12175131 ~ 12177615 (+)
G3701 NA non-coding upstream 474436 11721497 ~ 11722210 (+)
G3696 LOC104957816,LOC103371798 non-coding upstream 496241 11697041 ~ 11700405 (+)
G3669 LOC103371799 non-coding upstream 521288 11667554 ~ 11675358 (+)
G3663 NA non-coding upstream 667200 11529156 ~ 11529446 (+)
G3806 NA non-coding downstream 162606 12426610 ~ 12427488 (+)
G3880 NA non-coding downstream 424945 12688949 ~ 12690449 (+)
G3887 NA non-coding downstream 440187 12704191 ~ 12729269 (+)
G3903 NA non-coding downstream 532787 12796791 ~ 12797436 (+)
G3905 NA non-coding downstream 533834 12797838 ~ 12798186 (+)
LOC120559244 NA other upstream 1737358 10320573 ~ 10459288 (+)
G3115 NA other upstream 1805301 10390168 ~ 10391345 (+)
LOC120559474 NA other upstream 1933673 10255444 ~ 10262973 (+)
LOC120559251 NA other upstream 2029032 10123099 ~ 10167614 (+)
G3117 NA other upstream 2060487 9925671 ~ 10136159 (+)
LOC120565807 LOC103356709,LOC104962452,LOC102300655 other downstream 40706 12304710 ~ 12322209 (+)
mgat3b mgat3,LOC103374702 other downstream 266625 12530629 ~ 12603122 (+)
trnar-ccg NA other downstream 421996 12686000 ~ 12686072 (+)
LOC120555899 NA other downstream 528801 12792805 ~ 12796367 (+)
pla2g6 pla2g6 other downstream 808820 13072824 ~ 13090481 (+)

Expression


Co-expression Network