G3117


Basic Information

Item Value
gene id G3117
gene name NA
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9925671 ~ 10136159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU4402
AGATGGTCCAAAGcttccctctgtgtcagtgagtccctctgctgagatagtggagggcagttcagtgactctgacctgtagcagtgatgctaacccagcagctaACTACACCTGGTACAAGGAGAATGAAGACTCACCAAAAGCATCAGGACAGATCTTCACCATCACTGACTTCAGAGCTGAACACAGTGGGAATTATTACTGTGAAGCCCAGAACAGAAGAGGACGTCAGAACTCCACCTTACATCTGACTGTTGTAGCAGGTTCAATGAAATCAGTAGCTGCTGGATCCATCACTGCTATTTTCCTGGCTATCATATTCCTCTGTGCCTTCCTATTTATTAGAAGAAAGAGGTCCTGGAAACGAACCAGCGAGCCTGGAGAGAGACCAGACAACCAAGCTCAGGGTTCAGTGTATGACAGCCCTTCAGCTCCAGTCCAGAGAGACCAGACAACCAAGCTCAGGGTTCAGTGTATGACAGCCCTTCAGCTCCAGTGCAGAGAACTCCAGCAGAGCCACACGAAGACCTTTGCTATGCCAGCGTTAGCTTCTCTAAAAACCAGGAAGATGCTCTCTACTCCAACATCAGGCTAGCTCAGCGCCACAGAcacaaggaggaagaggaggacgaggaTGTGACATACACTGCTGTCAACTTTAAGAGTTCCAGTGCTACTACAGAATCAGGAAATCAAAAGGCTGTGGAGGATTTATCTGAACTGTACAGCACAGTCAGCAAACACCCAAGActttaaacacaacacagatCTGTGGTCTCTTTAAagggcagggttggtaatgttgaaaaactAGCAAGATTAGAAGGAAGCATCTCCTTGGTGCTctgtctaacccctccccctgccctctgggctcccccccacacacagacgtgcaccCCTGCCTCGCTGCTTTAGACAGTGTTCAAGCAGgttaaacacacatttatgaGTATTAGGATTGAGttgattt

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU4402 True 973 TUCP 0.40 8 9925671 10136159

Neighbor

gene id symbol gene type direction distance location
LOC120559412 NA coding upstream 108021 9802838 ~ 9817650 (+)
LOC120559524 LOC103359075 coding upstream 138119 9781934 ~ 9787552 (+)
LOC120559363 NA coding upstream 296188 9590493 ~ 9629483 (+)
LOC120559460 LOC103373852,LOC100691479,LOC101478757,LOC102296632 coding upstream 470156 9450096 ~ 9455515 (+)
LOC120559385 NA coding upstream 530084 9383587 ~ 9395587 (+)
LOC120559406 NA coding downstream 109034 10245193 ~ 10295893 (+)
LOC120559277 NA coding downstream 135352 10271511 ~ 10285014 (+)
LOC120565874 NA coding downstream 166533 10302692 ~ 10305020 (+)
LOC120559619 NA coding downstream 328662 10464821 ~ 10473545 (+)
LOC120565884 NA coding downstream 337947 10474106 ~ 10493894 (+)
G3163 NA non-coding upstream 83586 9840788 ~ 9842085 (+)
LOC120559553 NA non-coding upstream 242572 9680017 ~ 9683099 (+)
LOC120559541 NA non-coding upstream 281717 9640077 ~ 9643954 (+)
LOC120559601 NA non-coding upstream 286530 9638058 ~ 9639141 (+)
G3107 NA non-coding upstream 304813 9574916 ~ 9620858 (+)
LOC120559570 NA non-coding downstream 105268 10241427 ~ 10242838 (+)
LOC120559591 NA non-coding downstream 169629 10305788 ~ 10307665 (+)
LOC120559559 NA non-coding downstream 229303 10365462 ~ 10385779 (+)
G3214 NA non-coding downstream 247988 10384147 ~ 10413449 (+)
LOC120559586 NA non-coding downstream 286049 10422208 ~ 10424305 (+)
G3148 NA other upstream 152736 9771575 ~ 9772935 (+)
G3091 NA other upstream 393695 9472100 ~ 9531976 (+)
LOC120559285 LOC103373854,LOC100706414,LOC103154483,LOC106948732,LOC106929595 other upstream 412978 9492263 ~ 9512693 (+)
zbtb45 zbtb45,LOC102796714,LOC102207372,LOC100704009,LOC104952775,LOC103470204,LOC101487628 other upstream 1013763 8891315 ~ 8911908 (+)
abcc10 abcc10,LOC107102248 other upstream 1223216 8670171 ~ 8702455 (+)
LOC120559474 NA other downstream 119285 10255444 ~ 10262973 (+)
LOC120559244 NA other downstream 184414 10320573 ~ 10459288 (+)
G3115 NA other downstream 254009 10390168 ~ 10391345 (+)
LOC120567030 rac2,LOC102196216,LOC108231305,LOC107391413 other downstream 2060487 12196646 ~ 12264004 (+)
LOC120565807 LOC103356709,LOC104962452,LOC102300655 other downstream 2168551 12304710 ~ 12322209 (+)

Expression


Co-expression Network