LOC120559541


Basic Information

Item Value
gene id LOC120559541
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9640077 ~ 9643954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639310.1
ccctctgtgtcagtgagtccctctgctgagatagtggagggcagttcagtgactctgacctgtagcagtgatgctaacccagcagctaACTACACCTGGTACAAGGAGAATGAAGACTCACCAAAAGCATCAGGACAGATCTTCACCATCACTGACTATTTTACTGTGAAGCCCAGAACAGAAGAGGACGTCAGAACTCCACCTTACATCTGACTGTTGTGGCAGGTGCATCCAGATCACACGCTGGAATACTGCTCACTTTTGTCCTGTTCGTCGTCGTCCTCTCTGTCTACCTAGGGATTAGAAGATACAAGTTGCCCAATCAACGGTTTGAGCTCAGGCAGAAACTAAACACCATCGCACAGACCCTGCCACGCCTCACCTGCCCCCCAGCTGTCCGCCGGGTGTTTTCTGCCAAACATCTGACCCAAatttttgtgaatgtgttaTTGAGTTTTACAACAACACAGAACAACATAGCATTGTGTGGAAATTTGACGTCAGTAATGTTAATTATTAACTCCTTAAAGCTGTCACAATTCTAGCTAAGCACAGGAGGAAGCGACCAGAAACCACTGCTGCACCTTTAAGTGCAGCGCTTTTTGCTCAACATCCAACCACCACCTTCCCACCACCTAGATTCACATGTTGAGAAATATTTTTGCTGTAAATAACTTTAAATGTTTGGTCTGCCATACTCAATGCTTATTCCATCTATGTTCTTATAAGGTTTTGTTTGTGTCACTTTCATTATGAAtttggggcttttattttgaaggtgttAAGCAGTGCACACTGTCTAGCACCTGACTAATAAGTGGACAGGGTTTGTCAATGTTTTGTTTCATGTTGTGATTGATATTAACATGCTTCTGCTTAACATGGCATTATTAAACAATAAAATGCTGCAGTATGAAAGTGTTTCAGTTTGCAAAGCCAAGCATGTTTTGAATTAGCTATTCGTTTGTAATTGATAGAATAATATATTGTAATCAAACTTACACCAGATAGTATCTGTCTTTGCATGTTCTTTATCTACTTATTATTGAAATGTATTGAAAGAAATTCTGATACAGGATATAAAAGCCTCTATTCCACACTCAAGCAacacaaaacaatatatatactgtatatatattcacattttaacatgttgttttcataaaacacattcatttcatGATTGAAATTTTCTAACAATTCATAAATAAGTTACATAAATTACTGACAAGCTTTATAATTATACATTACACCTTTTGACAGGCAAAGTGCATCCAACCTATTCTTAAAAGAATTAGTTGAAGGGGAACGCACAACTTCTTCTGGAAGCTCGTTCCATGATTTTACCGCACAGAGTGTGAAAaaattctttctcttttcagacAGGCATGTTCTAGGGTAAAGTTTTAAAGAATTCCCTCGTGTCGCATACCTATTGCTCCAAAACTGAAAGATAGGCTCAACTGTTAAATCATATATTCCCTGTACAAGGTTATTCACCTGAATCATCAGTATCtcagtaatgtttttttctcagtaTCTCAACATATTGTTGCTGTTGATTTGACTAACTTTTGTTCGGGTTTCTCTTGTTGCAGAAATGACAGAAGCAggtttgtaattattattattatcaagtGCACCTCTTACCTAAGATATTCTTTTGAATTAGAGCACAACTCCTCCCAGTGGTTCACACAGGAAGCTGTGATGTGCTCCATTCCAACCACACCCTAACATCTGCTCTCAATACTAAACTTTTCCAATGC

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639310.1 True 1769 lncRNA 0.38 4 9640077 9643954

Neighbor

gene id symbol gene type direction distance location
LOC120559363 NA coding upstream 10594 9590493 ~ 9629483 (+)
LOC120559460 LOC103373852,LOC100691479,LOC101478757,LOC102296632 coding upstream 184562 9450096 ~ 9455515 (+)
LOC120559385 NA coding upstream 244490 9383587 ~ 9395587 (+)
LOC120559260 LOC103370034,LOC108247445,LOC107081964,LOC107382403 coding upstream 273279 9338719 ~ 9366798 (+)
LOC120559502 morn4,LOC104930036,LOC101480080 coding upstream 360143 9250439 ~ 9279934 (+)
LOC120559226 NA coding downstream 434 9644388 ~ 9983645 (+)
LOC120559524 LOC103359075 coding downstream 137980 9781934 ~ 9787552 (+)
LOC120559412 NA coding downstream 158884 9802838 ~ 9817650 (+)
LOC120565722 NA coding downstream 443188 10087142 ~ 10090156 (+)
LOC120559406 NA coding downstream 601239 10245193 ~ 10295893 (+)
LOC120559601 NA non-coding upstream 936 9638058 ~ 9639141 (+)
G3107 NA non-coding upstream 19219 9574916 ~ 9620858 (+)
G3089 NA non-coding upstream 34257 9518271 ~ 9605820 (+)
G3090 NA non-coding upstream 114637 9502426 ~ 9525440 (+)
G3069 NA non-coding upstream 123932 9467617 ~ 9516145 (+)
LOC120559553 NA non-coding downstream 36063 9680017 ~ 9683099 (+)
G3163 NA non-coding downstream 196834 9840788 ~ 9842085 (+)
LOC120559616 NA non-coding downstream 282641 9926595 ~ 9927447 (+)
LOC120559556 NA non-coding downstream 301061 9945015 ~ 9945296 (+)
G3130 NA non-coding downstream 305581 9949535 ~ 9950184 (+)
G3091 NA other upstream 108101 9472100 ~ 9531976 (+)
LOC120559285 LOC103373854,LOC100706414,LOC103154483,LOC106948732,LOC106929595 other upstream 127384 9492263 ~ 9512693 (+)
zbtb45 zbtb45,LOC102796714,LOC102207372,LOC100704009,LOC104952775,LOC103470204,LOC101487628 other upstream 728169 8891315 ~ 8911908 (+)
abcc10 abcc10,LOC107102248 other upstream 937622 8670171 ~ 8702455 (+)
socs7 socs7 other upstream 996375 8617383 ~ 8643702 (+)
G3148 NA other downstream 127621 9771575 ~ 9772935 (+)
G3117 NA other downstream 281717 9925671 ~ 10136159 (+)
LOC120559494 LOC103359075 other downstream 454735 10098689 ~ 10132142 (+)
LOC120565738 NA other downstream 464140 10108094 ~ 10116499 (+)
LOC120559251 NA other downstream 479145 10123099 ~ 10167614 (+)

Expression


Co-expression Network