RNA id: XR_005639310.1


Basic Information

Item Value
RNA id XR_005639310.1
length 1769
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC120559541
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9640077 ~ 9643954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccctctgtgtcagtgagtccctctgctgagatagtggagggcagttcagtgactctgacctgtagcagtgatgctaacccagcagctaACTACACCTGGTACAAGGAGAATGAAGACTCACCAAAAGCATCAGGACAGATCTTCACCATCACTGACTATTTTACTGTGAAGCCCAGAACAGAAGAGGACGTCAGAACTCCACCTTACATCTGACTGTTGTGGCAGGTGCATCCAGATCACACGCTGGAATACTGCTCACTTTTGTCCTGTTCGTCGTCGTCCTCTCTGTCTACCTAGGGATTAGAAGATACAAGTTGCCCAATCAACGGTTTGAGCTCAGGCAGAAACTAAACACCATCGCACAGACCCTGCCACGCCTCACCTGCCCCCCAGCTGTCCGCCGGGTGTTTTCTGCCAAACATCTGACCCAAatttttgtgaatgtgttaTTGAGTTTTACAACAACACAGAACAACATAGCATTGTGTGGAAATTTGACGTCAGTAATGTTAATTATTAACTCCTTAAAGCTGTCACAATTCTAGCTAAGCACAGGAGGAAGCGACCAGAAACCACTGCTGCACCTTTAAGTGCAGCGCTTTTTGCTCAACATCCAACCACCACCTTCCCACCACCTAGATTCACATGTTGAGAAATATTTTTGCTGTAAATAACTTTAAATGTTTGGTCTGCCATACTCAATGCTTATTCCATCTATGTTCTTATAAGGTTTTGTTTGTGTCACTTTCATTATGAAtttggggcttttattttgaaggtgttAAGCAGTGCACACTGTCTAGCACCTGACTAATAAGTGGACAGGGTTTGTCAATGTTTTGTTTCATGTTGTGATTGATATTAACATGCTTCTGCTTAACATGGCATTATTAAACAATAAAATGCTGCAGTATGAAAGTGTTTCAGTTTGCAAAGCCAAGCATGTTTTGAATTAGCTATTCGTTTGTAATTGATAGAATAATATATTGTAATCAAACTTACACCAGATAGTATCTGTCTTTGCATGTTCTTTATCTACTTATTATTGAAATGTATTGAAAGAAATTCTGATACAGGATATAAAAGCCTCTATTCCACACTCAAGCAacacaaaacaatatatatactgtatatatattcacattttaacatgttgttttcataaaacacattcatttcatGATTGAAATTTTCTAACAATTCATAAATAAGTTACATAAATTACTGACAAGCTTTATAATTATACATTACACCTTTTGACAGGCAAAGTGCATCCAACCTATTCTTAAAAGAATTAGTTGAAGGGGAACGCACAACTTCTTCTGGAAGCTCGTTCCATGATTTTACCGCACAGAGTGTGAAAaaattctttctcttttcagacAGGCATGTTCTAGGGTAAAGTTTTAAAGAATTCCCTCGTGTCGCATACCTATTGCTCCAAAACTGAAAGATAGGCTCAACTGTTAAATCATATATTCCCTGTACAAGGTTATTCACCTGAATCATCAGTATCtcagtaatgtttttttctcagtaTCTCAACATATTGTTGCTGTTGATTTGACTAACTTTTGTTCGGGTTTCTCTTGTTGCAGAAATGACAGAAGCAggtttgtaattattattattatcaagtGCACCTCTTACCTAAGATATTCTTTTGAATTAGAGCACAACTCCTCCCAGTGGTTCACACAGGAAGCTGTGATGTGCTCCATTCCAACCACACCCTAACATCTGCTCTCAATACTAAACTTTTCCAATGC

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639330.1 lncRNA upstream 936 9638058 ~ 9639141 (+) True LOC120559601
TU4358 lncRNA upstream 19219 9574916 ~ 9620858 (+) True G3107
TU4361 lncRNA upstream 21993 9574916 ~ 9618084 (+) False G3107
TU4337 lncRNA upstream 34257 9518271 ~ 9605820 (+) False G3089
TU4341 lncRNA upstream 108101 9525558 ~ 9531976 (+) True G3091
XR_005639313.1 lncRNA downstream 36063 9680017 ~ 9683099 (+) True LOC120559553
TU4454 lncRNA downstream 196834 9840788 ~ 9842085 (+) True G3163
XR_005639337.1 lncRNA downstream 282641 9926595 ~ 9927447 (+) True LOC120559616
XR_005639314.1 lncRNA downstream 301061 9945015 ~ 9945296 (+) True LOC120559556
TU4417 lncRNA downstream 305581 9949535 ~ 9950184 (+) True G3130
XM_039801047.1 mRNA upstream 10594 9590493 ~ 9629483 (+) True LOC120559363
XM_039801030.1 mRNA upstream 10594 9590493 ~ 9629483 (+) False LOC120559363
XM_039801038.1 mRNA upstream 10594 9590493 ~ 9629483 (+) False LOC120559363
XM_039800910.1 mRNA upstream 127384 9492263 ~ 9512693 (+) True LOC120559285
XM_039801160.1 mRNA upstream 184562 9450096 ~ 9455515 (+) True LOC120559460
XM_039800789.1 mRNA downstream 434 9644388 ~ 9983645 (+) True LOC120559226
XM_039801262.1 mRNA downstream 137980 9781934 ~ 9787552 (+) True LOC120559524
XM_039801115.1 mRNA downstream 158884 9802838 ~ 9817650 (+) True LOC120559412
XM_039801117.1 mRNA downstream 158884 9802838 ~ 9817650 (+) False LOC120559412
XM_039801118.1 mRNA downstream 158884 9802838 ~ 9817650 (+) False LOC120559412
TU4342 other upstream 112863 9472100 ~ 9527214 (+) False G3091
TU4305 other upstream 138948 9492309 ~ 9501129 (+) False LOC120559285
TU4189 other upstream 746584 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 1229142 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 1548572 8089813 ~ 8091505 (+) True G2590
TU4435 other downstream 127621 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 281717 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 479197 10123151 ~ 10124118 (+) False LOC120559251
TU4393 other downstream 746214 10390168 ~ 10391345 (+) True G3115
TU5171 other downstream 2552692 12196646 ~ 12261491 (+) False LOC120567030

Expression Profile