RNA id: XM_039800910.1


Basic Information

Item Value
RNA id XM_039800910.1
length 2186
RNA type mRNA
GC content 0.59
exon number 14
gene id LOC120559285
representative True

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9492263 ~ 9512693 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCCGACAGGAAGTCTGTTGGATGGTTTCGATCACTTCCTCTTCTTCGTCTCCTGTCTTAACGATCTCCGTAAAAGCAGAGTGAGAGAACAACATACTCCATCGCCGTTTCGGCTCGAATGAGCCACAACCTTCACTGTCACTGACGGACTGGGCTGTCATGGCGGAGGTCAGGAATATTTAGgcagaagaaaaaaagtccCAACTCTGGACAGGATCCTAATCAGACAGCAGGCACCATGAGGTGACGACGGTGACATCTTGTTTTTTTGCCGACCGGGACACATGGCAAGGATCACCTTTTCCTGCCTGCCGGCCTCCTGGTACTGCAGTGTGTCCTTGCTGTCTCTAGGCTGTGCCCCCCGACagagactgctgctgctgctcttcatCACCTGCGCCCTCCTCCTCATGGGAACCTACCAGAGGCAGCTGTGGGGCCCACAGCGACGGCCCGGGTCCCGAGTCAACAAGTACCTCTCCAGCGCAGAGTCCATGGAGGCCACCGACGTCCTCAACCCTGCTCTGAATTATGGGATCGTGGTGGACTGTGGCAGCAGTGGTTCTCGGGTCTTTGTGTACTACTGGCCCCCCCACAACGGGAACCCTCACACCCTGCTGGACGTCCGACAGATGAGGGGCCACGACCGCAAGCCAGTCGTCAAGAAGATCAAACCTGgtATCTCCACCCTGGCGAACACGCCCACGCAGGCCAGCGACTACCTCCACCCTCTCCTCAGCTTCGCCGCGGCTCACGTCCCAAAGACCAAACACAAAGAGACGCCGCTCTACATCCTCTGTACTGCTGGCATGCGGCTGCTGCCGGAGAGCCAGCAGGCGGACATCTTGGAGGACCTGGTCACTGATGTCCCTTTGGAGTTTGACTTCCTGTTTTCCCGATCCCATGCCGAGGTCATCTCTGGGAAACAAGAAGGAGTGTACGCGTGGATTGGCATTAATTTTGTGTTGGGCCGCTTTGAGCACGCCGATGACGAGGACGCCACAGTGGAGGTGACGACGGGGTCTCAGAAccagcagccaatcagcaggCGGCGCACAGTGGGCATCATGGATATGGGCGGAGCTTCGCTGCAGATCGCCTATGAGGTGCCCAGCGCCATCACCTTCAGTTCACCACAACAAgaGGAGGCCAGTAAGAGTGTTCTCGCGGAGTTTAATCTGGGCTGCGATGTCGAGCACACACAGCACGTTTACCGAGTCTACGTCACCACGTTCCTCGGCTTCGGAGGAAACATGGCCAGGCAGCGCTACGAGGACCGTCTCGTCAACGACACGCTGGCCAAGAACAGGTTTCTAACCACTCAGACGGGCCTGAGTGAGGACAAACCGTACCTGGACCCCTGTCTGCCGGTCAGCCTGTCCGAGACGGTTTCCAGGGACAACCACACGCTGTACCTGCGGGGTCAGGGCGACTGGACTCAGTGTCAAGAGGCCGTGCGACCCTTCCTGGGACTCCACAACGGCACCATGTCACCAGGGGGCGTCTACCAGgCTCCCATCAACTTCAGCAACAGCGAGTTCTACGGCTTCTCCGAGTTTTTTTACTGTACGGAGGACGTGCTGAGGCTGGGAGGACAGTACGACAGTCAGAAGTACTCCAGGGCTGCCATGGACTACTGCGCCACCAGGTGGCCGATACTGAAACAGCGCCTGGACAACAAGCTGTTCTCTCAGCAGGCCGACATCAGCAGACTCAAGTATCAGTGCTTCAAGTCGGCCTGGATGTACGAGGTGTTGCACTCCGGCTTCCGTTTCCCCACCGAGTACCTGAGTCTGAAAACAGCCCAGCTGGTCTACGACAAGGAGGTCCAGTGGACTCTGGGAGCCATCCTGTTCAAAACCCGCTTCCTGCCTCTCAGGGACCTGCAGCAGGAAACGCTGCGGCAGAGCCACCCCAGCTGGCTGCGCTCCTCCTTTGTCTACAACCACCACCTGTTCTCGCTCTGCATCCTGGTGGTGGTGCTGGCCATCCTGCTCTACATCCTGCGCCTGCGGAGGATCCACCAGCGCGAGCAGCGCCAGGCCGAGGCCCTCAACCTCCTCTGGGTCGAAGAGGGAGAGGCTCTCCTCCCCTGAGAAACCTCCCCCCCGTTTGGCATCGGAGGCTCCAGACTTGCCTGACCCTGCTGGCTCCCGTGTCCTCCACGACCACGATACTAAAAACG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14643 ENTPD7; ectonucleoside triphosphate diphosphohydrolase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4308 lncRNA upstream 185707 9263304 ~ 9306556 (+) False G3072
TU4311 lncRNA upstream 185707 9304947 ~ 9306556 (+) True G3072
TU4289 lncRNA upstream 311077 9180723 ~ 9181186 (+) True G3057
TU4273 lncRNA upstream 328352 9161187 ~ 9163911 (+) True G3045
TU4272 lncRNA upstream 336448 9152879 ~ 9155815 (+) True G3044
TU4337 lncRNA downstream 5578 9518271 ~ 9605820 (+) False G3089
TU4338 lncRNA downstream 5578 9518271 ~ 9524150 (+) True G3089
TU4341 lncRNA downstream 12865 9525558 ~ 9531976 (+) True G3091
TU4358 lncRNA downstream 62223 9574916 ~ 9620858 (+) True G3107
TU4361 lncRNA downstream 62223 9574916 ~ 9618084 (+) False G3107
XM_039801160.1 mRNA upstream 36748 9450096 ~ 9455515 (+) True LOC120559460
XM_039801088.1 mRNA upstream 96676 9383587 ~ 9395587 (+) False LOC120559385
XM_039801072.1 mRNA upstream 96676 9383587 ~ 9395587 (+) False LOC120559385
XM_039801080.1 mRNA upstream 96676 9383900 ~ 9395587 (+) True LOC120559385
XM_039801094.1 mRNA upstream 96677 9383587 ~ 9395586 (+) False LOC120559385
XM_039801047.1 mRNA downstream 77800 9590493 ~ 9629483 (+) True LOC120559363
XM_039801030.1 mRNA downstream 77800 9590493 ~ 9629483 (+) False LOC120559363
XM_039801038.1 mRNA downstream 77800 9590493 ~ 9629483 (+) False LOC120559363
XM_039800789.1 mRNA downstream 131695 9644388 ~ 9983645 (+) True LOC120559226
XM_039801262.1 mRNA downstream 269241 9781934 ~ 9787552 (+) True LOC120559524
TU4189 other upstream 598770 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 1081328 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 1400758 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 1544010 7941547 ~ 7948253 (+) True G2557
TU3532 other upstream 1792723 7699265 ~ 7699540 (+) True G2530
TU4435 other downstream 258882 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 412978 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 610458 10123151 ~ 10124118 (+) False LOC120559251
TU4393 other downstream 877475 10390168 ~ 10391345 (+) True G3115
TU5171 other downstream 2683953 12196646 ~ 12261491 (+) False LOC120567030

Expression Profile