RNA id: TU4337


Basic Information

Item Value
RNA id TU4337
length 732
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G3089
representative False

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9518271 ~ 9605820 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AcactcacacaaaacaaaaaacaaaaaaatattaggCTTCTATTTGTACGGCacttcttgtatttttttttttttctttttttctattttcttaaAGGTTACATACTGACGAAGGAATTGTACATAAAGATGTGTTAATGTGTTAACAGGTCCGAAGTATTACTGTAGTATTGTGGTTACGGAAAAAGACGGAcagaaaaaggaagaagagaaaagTAAAGGTTGCTGTACATTATATGACATGGTTATTATTGTGGAATGTTTGCTAGTCTCTCGGTTTTCCTTTCCTGCCGTCATCCGACGTGTTTTCCGACGGATTAAAGGCCCAGCGGGGATGGGACTACTCCGTCTTTATTCTCCCCGCGGGGAAGCCTCCGCTTGATACCGAGAAGGTATAGCATTTCATTTCTAACGAGACGCCggcgtttttttttaatgtcctCGCATCCGCAGCCGGCCTCTGATCCCGACAGAAACGACTGACTTGGTTTTGGTTAAAGCCGCGAGGTGCGTCTCAGCTGCCTCGCACGTGTCGTCGTTCCATTTGAGATCCAGAGCCGAGCACCTGTGTTTCTCAAAAATCTCTCTGGCTGACGTTCCAAAACCAGCAAACAGCTGTGTAAAGCTCCTAGCAGCCACTGTTCATGTACAACAGACCGCCAAATCAACACTGGAATATGTGTGTCGGTAGATTAGGATTAGACCAGGGGCGTAACTTTAGCTTTAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4304 lncRNA upstream 2126 9467617 ~ 9516145 (+) True G3069
TU4331 lncRNA upstream 21489 9407641 ~ 9496782 (+) True G3085
TU4308 lncRNA upstream 211715 9263304 ~ 9306556 (+) False G3072
TU4311 lncRNA upstream 211715 9304947 ~ 9306556 (+) True G3072
TU4289 lncRNA upstream 337085 9180723 ~ 9181186 (+) True G3057
XR_005639330.1 lncRNA downstream 32238 9638058 ~ 9639141 (+) True LOC120559601
XR_005639310.1 lncRNA downstream 34257 9640077 ~ 9643954 (+) True LOC120559541
XR_005639313.1 lncRNA downstream 74197 9680017 ~ 9683099 (+) True LOC120559553
TU4454 lncRNA downstream 234968 9840788 ~ 9842085 (+) True G3163
XR_005639337.1 lncRNA downstream 320775 9926595 ~ 9927447 (+) True LOC120559616
XM_039800910.1 mRNA upstream 5578 9492263 ~ 9512693 (+) True LOC120559285
XM_039801160.1 mRNA upstream 62756 9450096 ~ 9455515 (+) True LOC120559460
XM_039801088.1 mRNA upstream 122684 9383587 ~ 9395587 (+) False LOC120559385
XM_039800789.1 mRNA downstream 38568 9644388 ~ 9983645 (+) True LOC120559226
XM_039801262.1 mRNA downstream 176114 9781934 ~ 9787552 (+) True LOC120559524
XM_039801115.1 mRNA downstream 197018 9802838 ~ 9817650 (+) True LOC120559412
XM_039801117.1 mRNA downstream 197018 9802838 ~ 9817650 (+) False LOC120559412
XM_039801118.1 mRNA downstream 197018 9802838 ~ 9817650 (+) False LOC120559412
TU4305 other upstream 17142 9492309 ~ 9501129 (+) False LOC120559285
TU4189 other upstream 624778 8891448 ~ 8893493 (+) False zbtb45
TU3639 other upstream 1107336 8409857 ~ 8410935 (+) False LOC120565323
TU3609 other upstream 1426766 8089813 ~ 8091505 (+) True G2590
TU3574 other upstream 1570018 7941547 ~ 7948253 (+) True G2557
TU4435 other downstream 165755 9771575 ~ 9772935 (+) True G3148
TU4402 other downstream 319851 9925671 ~ 10136159 (+) True G3117
TU4497 other downstream 517331 10123151 ~ 10124118 (+) False LOC120559251
TU4393 other downstream 784348 10390168 ~ 10391345 (+) True G3115
TU5171 other downstream 2590826 12196646 ~ 12261491 (+) False LOC120567030

Expression Profile